errors when installing dealii-8.5.1 after successful cmake configuation

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曾元圆

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Aug 16, 2017, 7:45:25 AM8/16/17

to deal.II User Group

hello,

I follow following installation instructions to install dealii,

$ mkdir build
$ cd build
$ cmake -DCMAKE_INSTALL_PREFIX=/path/where/dealii/should/be/installed/to /path/to/dealii/sources
$ make install    (alternatively $ make -j<N> install)
$ make test

and configured cmake successfully.

###

-- Configuring done

-- Generating done

-- Build files have been written to: /mnt/hgfs/My code/dealii/build

However, when I input "make install", an error occurs:

Scanning dependencies of target expand_instantiations_exe

cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/depend.make:4: *** missing separator. Stop.

CMakeFiles/Makefile2:381: recipe for target 'cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/all' failed

make[1]: *** [cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/all] Error 2

Makefile:127: recipe for target 'all' failed

make: *** [all] Error 2

I really don't have much experience on linux and cmake, Could please someone help me on this? Thanks.

曾元圆

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Aug 16, 2017, 8:04:43 AM8/16/17

to deal.II User Group

在 2017年8月16日星期三 UTC+8下午7:45:25，曾元圆写道：

if I just ignore this and keep on inputting "make", the process will continue but a similar error will occur later, I don't know if this is OK.

曾元圆

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Aug 16, 2017, 8:20:03 AM8/16/17

to deal.II User Group

By the way, I'm installing it on the virtual machine on my windows.

在 2017年8月16日星期三 UTC+8下午7:45:25，曾元圆写道：

hello,

Bruno Turcksin

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Aug 16, 2017, 8:31:17 AM8/16/17

to deal.II User Group

Hello,

On Wednesday, August 16, 2017 at 7:45:25 AM UTC-4, 曾元圆 wrote:

###
-- Configuring done
-- Generating done
-- Build files have been written to: /mnt/hgfs/My code/dealii/build

On linux it is a bad idea to have a blank space in the name of a directory. Instead of /mnt/hgfs/My code/dealii/ use /mnt/hgfs/My_code/dealii/ If it doesn't work send the detailed.log file that should have been created by cmake.

Best,

Bruno

曾元圆

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Aug 17, 2017, 2:01:30 AM8/17/17

to deal.II User Group

Thank you for your reply, I have changed the folder name but it seems doesn't work. I'm trying to install dealii on the virtual machine named dyfluid. And /mnt/hgfs/My_code is the shared directory with my Windows system.

dyfluid@dyfluid:/mnt/hgfs/My_code$ cd dealii

dyfluid@dyfluid:/mnt/hgfs/My_code/dealii$ mkdir build

dyfluid@dyfluid:/mnt/hgfs/My_code/dealii$ cd build/

dyfluid@dyfluid:/mnt/hgfs/My_code/dealii/build$ cmake -DCMAKE_INSTALL_PREFIX=/mnt/hgfs/My_code/dealii/lib ..

-- This is CMake 3.5.1

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_external_macros.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_add_flags.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_check_compiler_setup.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_check_cxx_compiler_bug.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_check_mpi_interface.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_clear_cmake_required.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_configure_feature.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_add_definitions.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_add_library.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_add_test.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_find_file.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_find_library.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_find_path.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_insource_setup_target.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_invoke_autopilot.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_package_handle.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_pickup_tests.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_query_git_information.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_deal_ii_setup_target.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_decorate_with_stars.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_enable_if_links.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_enable_if_supported.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_enable_language_optional.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_evaluate_expression.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_expand_instantiations.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_filter_system_libraries.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_find_package.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_find_system_library.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_item_matches.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_purge_feature.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_push_cmake_required.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_register_feature.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_remove_duplicates.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_replace_flag.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_reset_cmake_required.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_setup_source_list.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_setup_unity_target.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_set_if_empty.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_strip_flag.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_switch_library_preference.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_to_string.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_to_string_and_add_prefix.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/macros/macro_verbose_include.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_cached_variables.cmake

-- The CXX compiler identification is GNU 5.4.0

-- The C compiler identification is GNU 5.4.0

-- Check for working CXX compiler: /usr/bin/c++

-- Check for working CXX compiler: /usr/bin/c++ -- works

-- Detecting CXX compiler ABI info

-- Detecting CXX compiler ABI info - done

-- Detecting CXX compile features

-- Detecting CXX compile features - done

-- Check for working C compiler: /usr/bin/cc

-- Check for working C compiler: /usr/bin/cc -- works

-- Detecting C compiler ABI info

-- Detecting C compiler ABI info - done

-- Detecting C compile features

-- Detecting C compile features - done

-- No working Fortran compiler found, disabling Fortran

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_deal_ii.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_compiler_flags.cmake

-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_DEBUG

-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_DEBUG - Success

-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_RELEASE

-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_RELEASE - Success

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_compiler_flags_gnu.cmake

-- Performing Test DEAL_II_HAVE_FLAG_pedantic

-- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success

-- Performing Test DEAL_II_HAVE_FLAG_fPIC

-- Performing Test DEAL_II_HAVE_FLAG_fPIC - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed

-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wall

-- Performing Test DEAL_II_HAVE_FLAG_Wall - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wextra

-- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith

-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings

-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wsynth

-- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare

-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wswitch

-- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success

-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual

-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wplacement_new

-- Performing Test DEAL_II_HAVE_FLAG_Wplacement_new - Failed

-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations

-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix

-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success

-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops

-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success

-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops

-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success

-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing

-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs

-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs - Success

-- Performing Test DEAL_II_HAVE_FLAG_Og

-- Performing Test DEAL_II_HAVE_FLAG_Og - Success

-- Performing Test DEAL_II_HAVE_FLAG_ggdb

-- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success

-- Include /mnt/hgfs/My_code/dealii/bundled/setup_bundled.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/checks/check_01_compiler_features.cmake

-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS

-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success

-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK

-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success

-- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER

-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT

-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success

-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE

-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE - Success

-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE

-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success

-- Performing Test DEAL_II_HAVE_FLAG_rdynamic

-- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success

-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER

-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success

-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION

-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections

-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success

-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED

-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success

-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE

-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success

-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA

-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success

-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD

-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Failed

-- Include /mnt/hgfs/My_code/dealii/cmake/checks/check_01_cpu_features.cmake

-- Check if the system is big endian

-- Searching 16 bit integer

-- Looking for sys/types.h

-- Looking for sys/types.h - found

-- Looking for stdint.h

-- Looking for stdint.h - found

-- Looking for stddef.h

-- Looking for stddef.h - found

-- Check size of unsigned short

-- Check size of unsigned short - done

-- Using unsigned short

-- Check if the system is big endian - little endian

-- Performing Test DEAL_II_HAVE_SSE2

-- Performing Test DEAL_II_HAVE_SSE2 - Success

-- Performing Test DEAL_II_HAVE_AVX

-- Performing Test DEAL_II_HAVE_AVX - Failed

-- Performing Test DEAL_II_HAVE_AVX512

-- Performing Test DEAL_II_HAVE_AVX512 - Failed

-- Performing Test DEAL_II_HAVE_OPENMP_SIMD

-- Performing Test DEAL_II_HAVE_OPENMP_SIMD - Success

-- Include /mnt/hgfs/My_code/dealii/cmake/checks/check_01_cxx_features.cmake

-- Performing Test DEAL_II_HAVE_FLAG_stdcxx17

-- Performing Test DEAL_II_HAVE_FLAG_stdcxx17 - Success

-- Using C++ version flag "-std=c++17"

-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTES

-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTES - Failed

-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14

-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14 - Success

-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE

-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Success

-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN

-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN - Success

-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK

-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Success

-- Performing Test DEAL_II_HAVE_CXX11_FEATURES

-- Performing Test DEAL_II_HAVE_CXX11_FEATURES - Success

-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK

-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success

-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK

-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success

-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK

-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success

-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK

-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success

-- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER

-- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER - Failed

-- Using C++ version flag "-std=c++14"

-- DEAL_II_WITH_CXX14 successfully set up

-- Performing Test DEAL_II_HAVE_ATTRIBUTE_FALLTHROUGH

-- Performing Test DEAL_II_HAVE_ATTRIBUTE_FALLTHROUGH - Failed

-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE

-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Success

-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS

-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success

-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS

-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed

-- Include /mnt/hgfs/My_code/dealii/cmake/checks/check_02_system_features.cmake

-- Looking for C++ include sys/resource.h

-- Looking for C++ include sys/resource.h - found

-- Looking for C++ include sys/time.h

-- Looking for C++ include sys/time.h - found

-- Looking for C++ include sys/types.h

-- Looking for C++ include sys/types.h - found

-- Looking for C++ include unistd.h

-- Looking for C++ include unistd.h - found

-- Looking for gethostname

-- Looking for gethostname - found

-- Looking for getpid

-- Looking for getpid - found

-- Performing Test m_LIBRARY

-- Performing Test m_LIBRARY - Success

-- Looking for jn

-- Looking for jn - found

-- Include /mnt/hgfs/My_code/dealii/cmake/checks/check_03_compiler_bugs.cmake

-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK

-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK - Success

-- Test successful, do not define DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG

-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK

-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success

-- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG

-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK

-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success

-- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG

-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG

-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG - Failed

-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK

-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success

-- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG

-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK

-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success

-- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES

-- Include /mnt/hgfs/My_code/dealii/cmake/checks/check_03_generator_bugs.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_1_bzip2.cmake

-- Could NOT find BZip2 (missing: BZIP2_LIBRARIES BZIP2_INCLUDE_DIR)

-- BZIP2_LIBRARIES: *** Required variable "_bzip2_libraries" set to NOTFOUND ***

-- BZIP2_INCLUDE_DIRS: *** Required variable "BZIP2_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find BZIP2

-- DEAL_II_WITH_BZIP2 has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_1_cuda.cmake

-- DEAL_II_WITH_CUDA is set to off.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_1_lapack.cmake

-- Looking for pthread.h

-- Looking for pthread.h - found

-- Looking for pthread_create

-- Looking for pthread_create - not found

-- Looking for pthread_create in pthreads

-- Looking for pthread_create in pthreads - not found

-- Looking for pthread_create in pthread

-- Looking for pthread_create in pthread - found

-- Found Threads: TRUE

-- A library with BLAS API not found. Please specify library location.

-- LAPACK requires BLAS

-- A library with LAPACK API not found. Please specify library location.

-- Performing Test gfortran_LIBRARY

-- Performing Test gfortran_LIBRARY - Failed

-- Performing Test quadmath_LIBRARY

-- Performing Test quadmath_LIBRARY - Success

-- Performing Test c_LIBRARY

-- Performing Test c_LIBRARY - Success

-- LAPACK_LIBRARIES: *** Required variable "_lapack_libraries" empty ***

-- LAPACK_LINKER_FLAGS:

-- Could NOT find LAPACK

-- DEAL_II_WITH_LAPACK has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_1_mpi.cmake

-- No suitable Fortran compiler was found! MPI Fortran interface can not be autodetected

-- Unable to determine MPI from MPI driver /usr/bin/cc

-- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH)

-- Unable to determine MPI from MPI driver /usr/bin/c++

-- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH)

-- Performing Test MPI_HAVE_MPI_SEEK_SET

-- Performing Test MPI_HAVE_MPI_SEEK_SET - Failed

-- MPI_MPI_H not found! Call:

-- FIND_FILE(MPI_MPI_H NAMES mpi.h HINTS)

-- MPI_LIBRARIES: *** Required variable "MPI_CXX_LIBRARIES" empty ***

-- MPI_INCLUDE_DIRS: *** Required variable "MPI_CXX_INCLUDE_PATH" empty ***

-- MPI_USER_INCLUDE_DIRS: *** Required variable "MPI_CXX_INCLUDE_PATH" empty ***

-- MPI_CXX_FLAGS:

-- MPI_LINKER_FLAGS:

-- Could NOT find MPI

-- DEAL_II_WITH_MPI has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_1_threads.cmake

-- TBB_LIBRARY not found! Call:

-- FIND_LIBRARY(TBB_LIBRARY NAMES tbb HINTS PATH_SUFFIXES lib lib64 lib)

-- TBB_DEBUG_LIBRARY not found! Call:

-- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES lib lib64 lib)

-- TBB_INCLUDE_DIR not found! Call:

-- FIND_PATH(TBB_INCLUDE_DIR tbb/tbb_stddef.h HINTS PATH_SUFFIXES include include/tbb tbb)

-- TBB_LIBRARIES: *** Required variable "TBB_LIBRARY" set to NOTFOUND ***

-- TBB_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to NOTFOUND ***

-- TBB_USER_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find TBB

-- DEAL_II_WITH_THREADS has unmet external dependencies.

-- Performing Test DEAL_II_HAVE_FLAG_pthread

-- Performing Test DEAL_II_HAVE_FLAG_pthread - Success

-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS

-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success

-- Performing Test DEAL_II_HAVE_FLAG_Wparentheses

-- Performing Test DEAL_II_HAVE_FLAG_Wparentheses - Success

-- DEAL_II_WITH_THREADS successfully set up with bundled packages.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_1_zlib.cmake

-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")

-- ZLIB_VERSION: 1.2.8

-- ZLIB_LIBRARIES: /usr/lib/x86_64-linux-gnu/libz.so

-- ZLIB_INCLUDE_DIRS: /usr/include

-- Found ZLIB

-- DEAL_II_WITH_ZLIB successfully set up with external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_2_metis.cmake

-- METIS_LIBRARY not found! Call:

-- FIND_LIBRARY(METIS_LIBRARY NAMES metis HINTS PATH_SUFFIXES lib lib64 lib build/Linux-x86_64/libmetis)

-- METIS_INCLUDE_DIR not found! Call:

-- FIND_PATH(METIS_INCLUDE_DIR metis.h HINTS PATH_SUFFIXES metis include/metis include)

-- METIS_LIBRARIES: *** Required variable "METIS_LIBRARY" set to NOTFOUND ***

-- METIS_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set to NOTFOUND ***

-- METIS_USER_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find METIS

-- DEAL_II_WITH_METIS has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_2_trilinos.cmake

-- EPETRA_CONFIG_H not found! Call:

-- FIND_FILE(EPETRA_CONFIG_H Epetra_config.h HINTS NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)

-- SACADO_CONFIG_H not found! Call:

-- FIND_FILE(SACADO_CONFIG_H Sacado_config.h HINTS NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)

-- SACADO_CMATH_HPP not found! Call:

-- FIND_FILE(SACADO_CMATH_HPP Sacado_cmath.hpp HINTS NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)

-- TRILINOS_LIBRARIES:

-- TRILINOS_INCLUDE_DIRS: *** Required variable "Trilinos_INCLUDE_DIRS" empty ***

-- TRILINOS_USER_INCLUDE_DIRS: *** Required variable "Trilinos_INCLUDE_DIRS" empty ***

-- Could NOT find TRILINOS

-- DEAL_II_WITH_TRILINOS has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_2_umfpack.cmake

-- DEAL_II_WITH_UMFPACK has unmet configuration requirements: DEAL_II_WITH_LAPACK has to be set to "ON".

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_3_petsc.cmake

-- PETSC_LIBRARY not found! Call:

-- FIND_LIBRARY(PETSC_LIBRARY NAMES petsc libpetsc HINTS / PATH_SUFFIXES lib lib64 lib)

-- PETSC_INCLUDE_DIR_ARCH not found! Call:

-- FIND_PATH(PETSC_INCLUDE_DIR_ARCH petscconf.h HINTS / PATH_SUFFIXES petsc include include/petsc)

-- PETSC_INCLUDE_DIR_COMMON not found! Call:

-- FIND_PATH(PETSC_INCLUDE_DIR_COMMON petscversion.h HINTS / PATH_SUFFIXES petsc include include/petsc)

-- PETSC_PETSCVARIABLES not found! Call:

-- FIND_FILE(PETSC_PETSCVARIABLES NAMES petscvariables HINTS / PATH_SUFFIXES conf lib/petsc/conf)

-- PETSC_LIBRARIES: *** Required variable "PETSC_LIBRARY" set to NOTFOUND ***

-- PETSC_INCLUDE_DIRS: *** Required variable "PETSC_INCLUDE_DIR_COMMON" set to NOTFOUND ***

-- PETSC_USER_INCLUDE_DIRS: *** Required variable "PETSC_INCLUDE_DIR_COMMON" set to NOTFOUND ***

-- Could NOT find PETSC

-- DEAL_II_WITH_PETSC has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_adolc.cmake

-- ADOLC_INCLUDE_DIR not found! Call:

-- FIND_PATH(ADOLC_INCLUDE_DIR NAMES adolc/adolc.h HINTS PATH_SUFFIXES include)

-- ADOLC_LIBRARY not found! Call:

-- FIND_LIBRARY(ADOLC_LIBRARY NAMES adolc HINTS PATH_SUFFIXES lib lib64 lib)

-- ADOLC_SETTINGS_H not found! Call:

-- FIND_FILE(ADOLC_SETTINGS_H adolc_settings.h HINTS ADOLC_INCLUDE_DIR-NOTFOUND ADOLC_INCLUDE_DIR-NOTFOUND/adolc/internal NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)

-- ADOLC_LIBRARIES: *** Required variable "ADOLC_LIBRARY" set to NOTFOUND ***

-- ADOLC_INCLUDE_DIRS: *** Required variable "ADOLC_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find ADOLC

-- DEAL_II_WITH_ADOLC has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_arpack.cmake

-- DEAL_II_WITH_ARPACK has unmet configuration requirements: DEAL_II_WITH_LAPACK has to be set to "ON".

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_boost.cmake

-- Could NOT find Boost

-- BOOST_LIBRARIES: *** Required variable "Boost_LIBRARIES" empty ***

-- BOOST_INCLUDE_DIRS: /usr/include

-- BOOST_USER_INCLUDE_DIRS: /usr/include

-- Could NOT find BOOST

-- DEAL_II_WITH_BOOST has unmet external dependencies.

-- Performing Test rt_LIBRARY

-- Performing Test rt_LIBRARY - Success

-- DEAL_II_WITH_BOOST successfully set up with bundled packages.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_gsl.cmake

-- GSL_LIBRARY not found! Call:

-- FIND_LIBRARY(GSL_LIBRARY NAMES gsl HINTS PATH_SUFFIXES lib lib64 lib)

-- GSL_CBLAS_LIBRARY not found! Call:

-- FIND_LIBRARY(GSL_CBLAS_LIBRARY NAMES gslcblas cblas refcblas HINTS PATH_SUFFIXES lib lib64 lib)

-- GSL_INCLUDE_DIR not found! Call:

-- FIND_PATH(GSL_INCLUDE_DIR gsl/gsl_version.h HINTS PATH_SUFFIXES include)

-- GSL_LIBRARIES: *** Required variable "GSL_LIBRARY" set to NOTFOUND ***

-- GSL_INCLUDE_DIRS: *** Required variable "GSL_INCLUDE_DIR" set to NOTFOUND ***

-- GSL_USER_INCLUDE_DIRS: *** Required variable "GSL_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find GSL

-- DEAL_II_WITH_GSL has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_hdf5.cmake

-- HDF5_INCLUDE_DIR not found! Call:

-- FIND_PATH(HDF5_INCLUDE_DIR hdf5.h HINTS PATH_SUFFIXES hdf5 hdf5/include include/hdf5 include)

-- HDF5_LIBRARY not found! Call:

-- FIND_LIBRARY(HDF5_LIBRARY NAMES hdf5 HINTS PATH_SUFFIXES hdf5/lib lib lib64 lib)

-- HDF5_HL_LIBRARY not found! Call:

-- FIND_LIBRARY(HDF5_HL_LIBRARY NAMES hdf5_hl HINTS PATH_SUFFIXES lib lib64 lib)

-- HDF5_PUBCONF not found! Call:

-- FIND_FILE(HDF5_PUBCONF NAMES H5pubconf.h H5pubconf-64.h HINTS HDF5_INCLUDE_DIR-NOTFOUND PATH_SUFFIXES hdf5 hdf5/include include/hdf5 include)

-- HDF5_LIBRARIES: *** Required variable "HDF5_HL_LIBRARY" set to NOTFOUND ***

-- HDF5_INCLUDE_DIRS: *** Required variable "HDF5_INCLUDE_DIR" set to NOTFOUND ***

-- HDF5_USER_INCLUDE_DIRS: *** Required variable "HDF5_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find HDF5

-- DEAL_II_WITH_HDF5 has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_muparser.cmake

-- MUPARSER_LIBRARY not found! Call:

-- FIND_LIBRARY(MUPARSER_LIBRARY NAMES muparser muparserd HINTS PATH_SUFFIXES lib lib64 lib)

-- MUPARSER_INCLUDE_DIR not found! Call:

-- FIND_PATH(MUPARSER_INCLUDE_DIR muParserDef.h HINTS PATH_SUFFIXES include)

-- MUPARSER_LIBRARIES: *** Required variable "MUPARSER_LIBRARY" set to NOTFOUND ***

-- MUPARSER_INCLUDE_DIRS: *** Required variable "MUPARSER_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find MUPARSER

-- DEAL_II_WITH_MUPARSER has unmet external dependencies.

-- DEAL_II_WITH_MUPARSER successfully set up with bundled packages.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_nanoflann.cmake

-- NANOFLANN_INCLUDE_DIR not found! Call:

-- FIND_PATH(NANOFLANN_INCLUDE_DIR nanoflann.hpp HINTS PATH_SUFFIXES include)

-- NANOFLANN_INCLUDE_DIRS: *** Required variable "NANOFLANN_INCLUDE_DIR" set to NOTFOUND ***

-- NANOFLANN_USER_INCLUDE_DIRS: *** Required variable "NANOFLANN_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find NANOFLANN

-- DEAL_II_WITH_NANOFLANN has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_netcdf.cmake

-- NETCDF_INCLUDE_DIR not found! Call:

-- FIND_PATH(NETCDF_INCLUDE_DIR netcdfcpp.h HINTS PATH_SUFFIXES netcdf include)

-- NETCDF_CPLUSPLUS_LIBRARY not found! Call:

-- FIND_LIBRARY(NETCDF_CPLUSPLUS_LIBRARY NAMES netcdf_c++ netcdf_cpp HINTS PATH_SUFFIXES lib lib64 lib)

-- NETCDF_C_LIBRARY not found! Call:

-- FIND_LIBRARY(NETCDF_C_LIBRARY NAMES netcdf HINTS PATH_SUFFIXES lib lib64 lib)

-- NETCDF_LIBRARIES: *** Required variable "NETCDF_CPLUSPLUS_LIBRARY" set to NOTFOUND ***

-- NETCDF_INCLUDE_DIRS: *** Required variable "NETCDF_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find NETCDF

-- DEAL_II_WITH_NETCDF has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_opencascade.cmake

-- OPENCASCADE_INCLUDE_DIR not found! Call:

-- FIND_PATH(OPENCASCADE_INCLUDE_DIR Standard_Version.hxx HINTS PATH_SUFFIXES include include/oce include/opencascade inc)

-- OPENCASCADE_TKBO not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKBO NAMES TKBO HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKBool not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKBool NAMES TKBool HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKBRep not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKBRep NAMES TKBRep HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKernel not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKernel NAMES TKernel HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKFeat not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKFeat NAMES TKFeat HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKFillet not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKFillet NAMES TKFillet HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKG2d not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKG2d NAMES TKG2d HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKG3d not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKG3d NAMES TKG3d HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKGeomAlgo not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKGeomAlgo NAMES TKGeomAlgo HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKGeomBase not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKGeomBase NAMES TKGeomBase HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKHLR not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKHLR NAMES TKHLR HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKIGES not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKIGES NAMES TKIGES HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKMath not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKMath NAMES TKMath HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKMesh not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKMesh NAMES TKMesh HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKOffset not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKOffset NAMES TKOffset HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKPrim not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKPrim NAMES TKPrim HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKShHealing not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKShHealing NAMES TKShHealing HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKSTEP not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKSTEP NAMES TKSTEP HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKSTEPAttr not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKSTEPAttr NAMES TKSTEPAttr HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKSTEPBase not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKSTEPBase NAMES TKSTEPBase HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKSTEP209 not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKSTEP209 NAMES TKSTEP209 HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKSTL not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKSTL NAMES TKSTL HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKTopAlgo not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKTopAlgo NAMES TKTopAlgo HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_TKXSBase not found! Call:

-- FIND_LIBRARY(OPENCASCADE_TKXSBase NAMES TKXSBase HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)

-- OPENCASCADE_LIBRARIES: *** Required variable "OPENCASCADE_TKBO" set to NOTFOUND ***

-- OPENCASCADE_INCLUDE_DIRS: *** Required variable "OPENCASCADE_INCLUDE_DIR" set to NOTFOUND ***

-- OPENCASCADE_USER_INCLUDE_DIRS: *** Required variable "OPENCASCADE_INCLUDE_DIR" set to NOTFOUND ***

-- Could NOT find OPENCASCADE

-- DEAL_II_WITH_OPENCASCADE has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_p4est.cmake

-- DEAL_II_WITH_P4EST has unmet configuration requirements: DEAL_II_WITH_MPI has to be set to "ON".

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_slepc.cmake

-- DEAL_II_WITH_SLEPC has unmet configuration requirements: DEAL_II_WITH_PETSC has to be set to "ON".

-- Include /mnt/hgfs/My_code/dealii/cmake/configure/configure_sundials.cmake

-- SUNDIALS_LIB_IDA not found! Call:

-- FIND_LIBRARY(SUNDIALS_LIB_IDA NAMES sundials_ida HINTS PATH_SUFFIXES lib lib64 lib)

-- SUNDIALS_LIB_KINSOL not found! Call:

-- FIND_LIBRARY(SUNDIALS_LIB_KINSOL NAMES sundials_kinsol HINTS PATH_SUFFIXES lib lib64 lib)

-- SUNDIALS_LIB_SER not found! Call:

-- FIND_LIBRARY(SUNDIALS_LIB_SER NAMES sundials_nvecserial HINTS PATH_SUFFIXES lib lib64 lib)

-- SUNDIALS_LIBRARIES: *** Required variable "SUNDIALS_LIB_IDA" set to NOTFOUND ***

-- SUNDIALS_INCLUDE_DIRS: /include

-- SUNDIALS_USER_INCLUDE_DIRS: /include

-- Could NOT find SUNDIALS

-- DEAL_II_WITH_SUNDIALS has unmet external dependencies.

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_cpack.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_custom_targets.cmake

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_finalize.cmake

-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG

-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG - Success

-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_RELEASE

-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_RELEASE - Success

-- Include /mnt/hgfs/My_code/dealii/cmake/setup_write_config.cmake

-- Query git repository information.

-- Found Git: /usr/bin/git (found version "2.7.4")

-- Configuring done. Proceed to target definitions now.

-- Setting up bundled features

-- BOOST::Iostreams will not support bz2'ed streams because libbz2 or its header files could not be found

-- Performing Test DEAL_II_HAVE_FLAG_Wnested_anon_types

-- Performing Test DEAL_II_HAVE_FLAG_Wnested_anon_types - Failed

-- Performing Test DEAL_II_HAVE_FLAG_Wimplicit_fallthrough

-- Performing Test DEAL_II_HAVE_FLAG_Wimplicit_fallthrough - Failed

-- Setting up bundled features - Done

-- Setting up library

-- Setting up library - Done

-- Setting up project configuration

-- Setting up project configuration - Done

-- Setting up examples

-- step-17 - dependencies not satisfied

-- step-18 - dependencies not satisfied

-- step-22 - dependencies not satisfied

-- step-29 - dependencies not satisfied

-- step-31 - dependencies not satisfied

-- step-32 - dependencies not satisfied

-- step-33 - dependencies not satisfied

-- step-35 - dependencies not satisfied

-- step-36 - dependencies not satisfied

-- step-37 - dependencies not satisfied

-- step-40 - dependencies not satisfied

-- step-41 - dependencies not satisfied

-- step-42 - dependencies not satisfied

-- step-43 - dependencies not satisfied

-- step-45 - dependencies not satisfied

-- step-46 - dependencies not satisfied

-- step-50 - dependencies not satisfied

-- step-54 - dependencies not satisfied

-- step-55 - dependencies not satisfied

-- step-56 - dependencies not satisfied

-- step-57 - dependencies not satisfied

-- Setting up examples - Done

-- Setting up quick_tests in DEBUG mode

-- Setting up quick_tests in DEBUG mode - Done

-- Setting up testsuite

-- Setting up testsuite - Done

###

# deal.II configuration:

# CMAKE_BUILD_TYPE: DebugRelease

# BUILD_SHARED_LIBS: ON

# CMAKE_INSTALL_PREFIX: /mnt/hgfs/My_code/dealii/lib

# CMAKE_SOURCE_DIR: /mnt/hgfs/My_code/dealii

# (version 9.0.0-pre)

# CMAKE_BINARY_DIR: /mnt/hgfs/My_code/dealii/build

# CMAKE_CXX_COMPILER: GNU 5.4.0 on platform Linux x86_64

# /usr/bin/c++

# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON):

# ( DEAL_II_WITH_64BIT_INDICES = OFF )

# ( DEAL_II_WITH_ADOLC = OFF )

# ( DEAL_II_WITH_ARPACK = OFF )

# DEAL_II_WITH_BOOST set up with bundled packages

# ( DEAL_II_WITH_BZIP2 = OFF )

# ( DEAL_II_WITH_CUDA = OFF )

# DEAL_II_WITH_CXX14 = ON

# ( DEAL_II_WITH_CXX17 = OFF )

# ( DEAL_II_WITH_GSL = OFF )

# ( DEAL_II_WITH_HDF5 = OFF )

# ( DEAL_II_WITH_LAPACK = OFF )

# ( DEAL_II_WITH_METIS = OFF )

# ( DEAL_II_WITH_MPI = OFF )

# DEAL_II_WITH_MUPARSER set up with bundled packages

# ( DEAL_II_WITH_NANOFLANN = OFF )

# ( DEAL_II_WITH_NETCDF = OFF )

# ( DEAL_II_WITH_OPENCASCADE = OFF )

# ( DEAL_II_WITH_P4EST = OFF )

# ( DEAL_II_WITH_PETSC = OFF )

# ( DEAL_II_WITH_SLEPC = OFF )

# ( DEAL_II_WITH_SUNDIALS = OFF )

# DEAL_II_WITH_THREADS set up with bundled packages

# ( DEAL_II_WITH_TRILINOS = OFF )

# ( DEAL_II_WITH_UMFPACK = OFF )

# DEAL_II_WITH_ZLIB set up with external dependencies

# Component configuration:

# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )

# DEAL_II_COMPONENT_EXAMPLES

# ( DEAL_II_COMPONENT_PACKAGE = OFF )

# ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF )

# Detailed information (compiler flags, feature configuration) can be found in detailed.log

# Run $ make info to print a help message with a list of top level targets

###

-- Configuring done

-- Generating done

-- Build files have been written to: /mnt/hgfs/My_code/dealii/build

dyfluid@dyfluid:/mnt/hgfs/My_code/dealii/build$ make

Scanning dependencies of target expand_instantiations_exe

cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/depend.make:4: *** missing separator. Stop.

CMakeFiles/Makefile2:381: recipe for target 'cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/all' failed

make[1]: *** [cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/all] Error 2

Makefile:127: recipe for target 'all' failed

make: *** [all] Error 2

在 2017年8月16日星期三 UTC+8下午8:31:17，Bruno Turcksin写道：

Jean-Paul Pelteret

unread,

Aug 17, 2017, 7:35:59 AM8/17/17

to deal.II User Group

Hi,

Did you delete your build directory after renaming the parent directory? If not, then you might want to do so and try to configure and build deal.II again. Sometimes CMake caches some data that remains stale even after a project is reconfigured.

I hope that this helps,

Jean-Paul

曾元圆

unread,

Aug 17, 2017, 8:18:05 AM8/17/17

to deal.II User Group

Yes, I have deleted the previous dealii and restart from unpack the compressed package, so I think the name of the parent directory is not the problem.

I have googled the reason for "Scanning dependencies of target expand_instantiations_exe

cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/depend.make:4: *** missing separator. Stop."

and it is probably caused by the default editor on my Linux system(some error occurs if confuse Tab with space) so I have changed the default editor to vim but still doesn't work.

Then I checked the file under the directory of the error message (build/cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/)

open the file "depend.make", and find the following file content:

# CMAKE generated file: DO NOT EDIT!

# Generated by "Unix Makefiles" Generator, CMake Version 3.5

cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/expand_instantiations.cc.o: ../cmake/scripts/expand_instantiations.cc

I'm not sure if this is where the error lies and don't know how to solve this. Sincerely hope someone can help me with this.

在 2017年8月17日星期四 UTC+8下午7:35:59，Jean-Paul Pelteret写道：

Bruno Turcksin

unread,

Aug 17, 2017, 8:23:48 AM8/17/17

to dea...@googlegroups.com

Do you have the same problem if you try to install deal.II in a
directory that is not shared with windows?

Best,

Bruno

曾元圆

unread,

Aug 17, 2017, 8:45:12 AM8/17/17

to deal.II User Group

I tried to install it in a sub-directory of /home and it really worked! Thank you so much, but I'm still confused why I can't install it in the shared directory. Probably there are some conflicts between Windows environment and Linux?

在 2017年8月17日星期四 UTC+8下午8:23:48，Bruno Turcksin写道：

Bruno Turcksin

unread,

Aug 17, 2017, 8:49:17 AM8/17/17

to dea...@googlegroups.com

2017-08-17 8:45 GMT-04:00 曾元圆 <2012...@gmail.com>:
> I tried to install it in a sub-directory of /home and it really worked!
> Thank you so much, but I'm still confused why I can't install it in the
> shared directory. Probably there are some conflicts between Windows
> environment and Linux?

Great! I don't know why you can't install deal in the shared
directory. It has probably something to do with the fact that cmake
generate a Makefile for Linux but Windows is the real "owner" of the
directory.

Best,

Bruno

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