Groups

dDocent User Help Forum

Contact owners and managers

1–9 of 153

For debugging or troubleshooting, please include the following information:

The last output in dDocent.runs file
The entire dDocent_main.LOG
The ouput of ls -l in your working directory

0 selected

4/29/19

Reference Assembly Tutorial--Carp and Open3 perl module compile errors

Seems the issue may have been a Linux distro one. The perl problems arose on an old Toshiba laptop on

unread,

Reference Assembly Tutorial--Carp and Open3 perl module compile errors

Seems the issue may have been a Linux distro one. The perl problems arose on an old Toshiba laptop on

4/29/19

cailin...@me.com, Jon Puritz2

9/10/18

Will dDocent work for paired-end RNA?

No, sorry. dDocent will not work properly for RNA applications. -- Jon Puritz, PhD Assistant

unread,

Will dDocent work for paired-end RNA?

No, sorry. dDocent will not work properly for RNA applications. -- Jon Puritz, PhD Assistant

9/10/18

sjki...@gmail.com, Jon Puritz4

5/5/18

to trim or not to trim for de novo assembly?

Jon: Thanks for the email and I apologize: I sent the contents of the wrong directory. It should be:

unread,

to trim or not to trim for de novo assembly?

Jon: Thanks for the email and I apologize: I sent the contents of the wrong directory. It should be:

5/5/18

Josh Thia, Jon Puritz2

7/24/17

Mapping over NNNNNNNNNN

Hi Josh, I haven't seen case 1 before, but I have seen loci like your case 2. In both cases, I

unread,

Mapping over NNNNNNNNNN

Hi Josh, I haven't seen case 1 before, but I have seen loci like your case 2. In both cases, I

7/24/17

Jon Puritz, Sophie D19

7/17/15

Re: Error running dDocent: function gensub never defined

Do you have an idea why my sequences are of length 'longest and shortest : 119 and 117' ? I

unread,

Re: Error running dDocent: function gensub never defined

Do you have an idea why my sequences are of length 'longest and shortest : 119 and 117' ? I

7/17/15

philip.d.anderson1, Jon Puritz2

7/15/15

dDocent v2.04 overrides user-defined $simC in paired-end mode ?

Hi Philip, It's not really an override. That line is for the first stage of read clustering.

unread,

dDocent v2.04 overrides user-defined $simC in paired-end mode ?

Hi Philip, It's not really an override. That line is for the first stage of read clustering.

7/15/15

adrienne...@eagles.usm.edu

1/15/15

clone_filter: malloc() memory corruption (fast)

Hi all, I'm running into some weird issues with clone_filter. On some files, it throws the

unread,

clone_filter: malloc() memory corruption (fast)

Hi all, I'm running into some weird issues with clone_filter. On some files, it throws the

1/15/15

Chris Brauer, … Quynh Quach11

2/26/16

error dDocent exits

Hi Jon, Thank you for helping me, the run went smoothly this time and all the output files were

unread,

error dDocent exits

Hi Jon, Thank you for helping me, the run went smoothly this time and all the output files were

2/26/16

Zac Forsman, adrienne...@eagles.usm.edu2

6/25/14

Problems with dDocent install

Hi Zac, Are you still having this problem? I have been working through the installation process and I

unread,

Problems with dDocent install

Hi Zac, Are you still having this problem? I have been working through the installation process and I

6/25/14

Search

Clear search

Close search

Google apps

Main menu