bowtie2 not avaliable from the current channels

[Pavel Shliaha]

I am trying to isntall bowtie2 as the manual suggests, but I run into the following error.

(base) C:\WINDOWS\system32>conda config --add channels defaults

Warning: 'defaults' already in 'channels' list, moving to the top

(base) C:\WINDOWS\system32>conda config --add channels bioconda

Warning: 'bioconda' already in 'channels' list, moving to the top

(base) C:\WINDOWS\system32>conda config --add channels conda-forge

Warning: 'conda-forge' already in 'channels' list, moving to the top

(base) C:\WINDOWS\system32>conda install bowtie2

Collecting package metadata (current_repodata.json): done

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

Collecting package metadata (repodata.json): done

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - bowtie2

Current channels:

  - https://conda.anaconda.org/conda-forge/win-64

  - https://conda.anaconda.org/conda-forge/noarch

  - https://conda.anaconda.org/bioconda/win-64

  - https://conda.anaconda.org/bioconda/noarch

  - https://repo.anaconda.com/pkgs/main/win-64

  - https://repo.anaconda.com/pkgs/main/noarch

  - https://repo.anaconda.com/pkgs/r/win-64

  - https://repo.anaconda.com/pkgs/r/noarch

  - https://repo.anaconda.com/pkgs/msys2/win-64

  - https://repo.anaconda.com/pkgs/msys2/noarch

To search for alternate channels that may provide the conda package you're

looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

[Jon Puritz]

Bowtie2 is not part of dDocent and dDocent is not compatible with Windows systems.

-- 

Jon Puritz, PhD

Assistant Professor

Department of Biological Sciences

University of Rhode Island

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Cell: 401-338-8739

Work: 401-874-9020

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