unit of HMM parameter using dChipSNP

[Alex Root]

I'm using dChipSNP to do LOH analysis. I think the HMM parameter
length has a unit of bases. Therefore, the default of HMM Length
10,000 corresponds to 10kb. Is this correct?

thanks,
Alex

[Cheng Li]

Hi Alex,

The HMM length here means 10,000 consecutive SNPs that will be run for HMM.

Cheng

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