DescTools R Library can't install with ansible methode

[Marco Vinicio Gómez Gutiérrez]

Good Morning, we are trying to install Dataverse with ansible methode but it is not possible. The error display shows problems related to DescTools and compilation with c++ 17. We are trying manual installation of DescTools executing R and  install.packages("DescTools", repos="https://cloud.r-project.org/", lib="/usr/lib64/R/library" )

I get this message :

aux_fct.cpp:48:10: error: ‘lcm’ is not a member of ‘std’
   48 |     std::lcm(a,b);
      |          ^~~
aux_fct.cpp: In function ‘long long int compute_GCD(long long int, long long int)’:
aux_fct.cpp:54:10: error: ‘gcd’ is not a member of ‘std’
   54 |     std::gcd(a,b);
      |          ^~~
make: *** [/usr/lib/R/etc/Makeconf:178: aux_fct.o] Error 1
make: *** Waiting for unfinished jobs....
ERROR: compilation failed for package ‘DescTools’
* removing ‘/root/R/x86_64-pc-linux-gnu-library/4.2/DescTools’

The downloaded source packages are in
        ‘/tmp/Rtmp0YyyI1/downloaded_packages’
Warning message:
In install.packages("DescTools") :
  installation of package ‘DescTools’ had non-zero exit status

We are installing Debian 12.2 SO . 

How can We install dataverse with ansible? Is it possible to correct the problem in ansible installation? o How can I install DescTools manually?

att

Marco Vinicio Gomez Gutierrez

SIBITEC, TEC Costa Rica

[Donald Sizemore II]

hello,

if you’re using dataverse-ansible, it simply calls “install.packages(‘DescTools’)” which is how you would install the package manually.

the ansible wrapper bits are on lines 56-58 here:

I don’t expect a package compilation error will be specific to the installation method so much as the underlying OS; I’ll try to test under Debian 12 today or tomorrow.

If the problem turns out to be package installation order or something else which may be documented, we would love a pull request!

Don

p.s. unless you really want R, it isn’t required for normal Dataverse operation. if you’re on a deadline you can always set rserve.enabled == false in your group_vars file, then come back and troubleshoot R later.

painstakingly pecked on my iphone.

On Nov 28, 2023, at 20:33, Marco Vinicio Gómez Gutiérrez <marcog...@gmail.com> wrote:



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[Patrick]

Dear Marco and Don,

I faced the same problem on SLES 15 with the ansible role. What helped in the end was adding

CXXFLAGS = -std=c++17 to ~root/.R/Makevars

after that I could manually install DescTools (and probably the Ansible Role would've managed it, too)

I hope that helps,

Patrick