Issues with latlong data
Av U
Bernd.Gruber
Hi Avril
Somehow the lat long data seems to be incorrect. Can you try
itk@other$latlon and check how this look likes. Should be a data.frame with coordinates in lat lon for all individuals.
And can you check that you have a population defined in your genlight object.
e.g.
table(pop(ltk))
Can you paste the results here so I can have a look at it.
Cheers,Bernd
Ps. If possible could send me your data set (happy to have it truncated in terms of loci data, e.g.
#only the first 10 loci, but all individual meta data.
saveRDS(ltk[, 1:10], file=“ltk.rda”) and send it to me.
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Av U
Bernd.Gruber
Hi Avril,
Your file seems to work for me.
Maybe you need to upgrade to our betaVersion (the tested version on github)
Can you check
packageVersion(“dartR”)
if 1.9.9.1 then most likely better to upgrade to 2.3.3 via
gl.install.vanila.dartR(flavour=’dev’)
here is what I used
ltk <- readRDS("d:/temp/kkk/ltk.rda")
gl.map.interactive(ltk)
and the map looks like it could be koalas:
Cheers, Bernd
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