Keep loci based on 1 row naming format for allele ID and function to convert genlight object to HAPMAP format

[Rizki Awaludin]

Hi,

Is there a way to filter loci using gl.keep.loc() based on a list of loci with a naming format like in this DArT report 1 row format?

For example, like this:

100050816|F|0-33:A>G-33:A>G

100050892|F|0-29:T>C-29:T>C

100050908|F|0-15:G>A-15:G>A

100051019|F|0-12:T>C-12:T>C

100051192|F|0-6:A>G-6:A>G

 

My second question, how to convert genlight object to HAPMAP format?