Read coverage

[France Dufresne]

Hello,

I am wondering if it is possible to estimate read depth per individual ? I only saw the function to estimate read depth per SNP ?

Many thanks

France Dufresne, Ph.D.
Département de Biologie
Centre d'Études Nordiques
Université du Québec à Rimouski
300 allée des ursulines
Rimouski, Québec,
Canada G5L 3A1

[Renee Catullo]

Hi France,

No, to get information about that you would need the VCF, and you can use functions in vcfR package to look at individual and and individual/allele read depth.

Cheers,

Renee

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