Error in gl2vcf

[Marcelo Rosas]

Hi dartR team, & Luis

with a genlight object created with dartR, I can generate reports, monomorphs, overshoot, reproducibility and callrate filters. I can save as rds and csv . But when I try to export to PLINK and save I get the error

 

Error in names(x) <- value :

  'names' attribute [2] must be the same length as the vector [1]  
 

the same error also occurs when trying to export as vcf with   gl2vcf

thanks

Marcelo Rosas

[Elspeth McLennan]

Hi Marcelo, 

I'm having the same problem when trying to convert gl2plink. Did you have any luck getting this one to work?

Thanks, 

Elle

[Jose Luis Mijangos]

Hi Elle,

I think this bug has been fixed and it is available in the beta version of dartR. You can installl this version as shown below:

> library(dartR)
> gl.install.vanilla.dartR(flavour = "dev”)

Than please try again to run the gl2plink function .

Cheers,
Luis

> On 17 Mar 2023, at 2:24 pm, Elspeth McLennan <elle.mc...@gmail.com> wrote:
>
> Elle

[Elspeth McLennan]

Hi Luis, 

That worked perfectly, thank you!

Cheers, 

Elle