gl.filter.monomorphics does not remove loci all NAs

[Gabriella Scatà]

Hi everyone,

By removing one of the individuals in my dataset, I have obtained a dataset with only 1 locus with all NAs across individuals. 

So, I ran dartR.base::gl.filter.monomorphs, but the function says "no monomorphic loci to remove". And when I check the dataset after the filtering the locus scored all NAs in still in my dataset.

I thought this functions removes both monomorphic and all NAs loci, isn't that correct?

Is that ok to leave that locus in for pop structure analysis?

Thanks

Best,

Gabriella

[Jose Luis Mijangos]

Hi Gabriella,

Thank you for reporting that bug. The bug doesn’t affect the results of the filter/report, the bug is just in the reporting sentence. 

We have fixed this bug in the developing version of dartRverse which you can install as below:

library(dartRverse)
dartRverse_install(package = "dartR.base", rep = "github", branch = "dev")

Cheers,

Luis