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Hi Gabriela,
We are about to have a new function implemented in the new package dartR.captive. It is not 100% ready yet and yes the current function renames the names in the emibd9 file to avoid problems with spaces in indnames.
The new function will return a matrix with the same indNames as the genlight object (and in the same order as provided), but as mentioned will take another week or so until tested.
I will let you know when finished.
Cheers, Bernd
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