Package installation

[Alice Atikessé]

Hello,

I'm diving back into my old scripts that manipulate a Genlight dataset. Apologies in advance for this very basic question—I haven’t run them in almost two years.

I installed the following new R packages:

install.packages("dartR.base") 

install.packages("dartR.data") 

install.packages("dartRverse") 

dartRverse_install("all")

Then, I loaded the libraries:

library(dartRverse) 

library(dartR.data)

However, I’m unable to run very basic dartR functions that I used before. R keeps giving me the same error message:

could not find function "gl.filter.callrate"

I have read Bernd's announcement here:
https://groups.google.com/g/dartr/c/XOKSIUMA9k0/m/4Q9XIAo5AAAJ

Am I missing something?

Thank you so much in advance,

Alice

[Jose Luis Mijangos]

Hi Alice,

Could you please follow the solutions described in the link below:

https://groups.google.com/g/dartr/c/Bc4aT7GmHjs/m/ZYBQ_ekaEgAJ

Cheers,

Luis 

[Bernd.Gruber]

Hi Alice,

 

Weird you cannot find the function. It seems dartR.base has not installed correctly. Can you check in Rstudio under the package tab that you can check dartR.base manually.

 

When you ran the code you posted do you see any error message (e.g. dartR.base failed to install because of a missing dependency?

 

Cheers, Bernd

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[Alice Atikessé]

Hi, thank you so much for your quick answer. 

I followed  both of your instructions and it is fixed. I also updated R since I was running an old version (4.1.2), and it seems to work now.