error in gl.ld.haplotype function

[Cristian Canales]

hello friends!

I am running the following function:

gl.ld.haplotype(mygl1,chrom_name = "LR991647.1_chromosome_24", ld_max_pairwise = 10000000 ).

this works well for some chromosomes, but for others, I get the following error:

Starting gl.ld.haplotype 
Processing genlight object with SNP data
Calculating pairwise LD in population F 
Analysing chromosome LR991647.1_chromosome_24 
Regions defined for each Polygons
Error in `[.data.frame`(df.4.cut_4, , 2) : undefined columns selected

Could someone explain to me why this error occurs and if you know how to fix it?

Thanks in advance

cca

Translated with DeepL

[Jose Luis Mijangos]

Hi,

Thank you for reporting this bug. The bug has been fixed. The updated version of the function is available in the beta version of dartR which can be installed as shown below:

> library(dartR)
> gl.install.vanilla.dartR(flavour = "beta")

Cheers,

Luis

[Cristian Canales]

Thanks, Luis,
now it's working!
cca

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