UnboundLocalError: local variable 'chrom_name' referenced before assignment
Tsviya Olender
Hi Zheng
Unfortunately, I am getting errors when trying to run daPars. The error is below. I will appreciate your help.
[lvzvia@molgen dapars-master]$ python src/DaPars_main.py configure_file.txt &
[lvzvia@molgen dapars-master]$ [Wed 30 Nov 2016 12:27:07 PM ] Start Analysis ...
[Wed 30 Nov 2016 12:27:07 PM ] Loading coverage ...
Traceback (most recent call last):
File "src/DaPars_main.py", line 548, in <module>
De_Novo_3UTR_Identification_Loading_Target_Wig_for_TCGA_Multiple_Samples_Main(sys.argv)
File "src/DaPars_main.py", line 154, in De_Novo_3UTR_Identification_Loading_Target_Wig_for_TCGA_Multiple_Samples_Main
All_samples_Target_3UTR_coverages, All_samples_sequencing_depths, UTR_events_dict = Load_Target_Wig_files(All_Sample_files, Annotated_3UTR_file)
File "src/DaPars_main.py", line 509, in Load_Target_Wig_files
curr_sample_All_chroms_coverage_dict[chrom_name][1].append(0)
UnboundLocalError: local variable 'chrom_name' referenced before assignment
[1]+ Exit 1 python src/DaPars_main.py configure_file.txt
Tsviya
From: Zheng Xia [mailto:xi...@ohsu.edu]
Sent: Monday, November 28, 2016 8:01 PM
To: Tsviya Olender
Cc: Li, Wei; dap...@googlegroups.com
Subject: Re: Missing parentheses in DaPar
Hi Tsviya,
DaPars is developed in Python2.7. So please use python2.7 instead of python3.
Thanks,
Zheng
On Nov 28, 2016, at 6:50 AM, Li, Wei <w...@bcm.edu> wrote:
Any idea about this error?
Thanks
Sent from my iPhone
-Wei
Begin forwarded message:From: Tsviya Olender <tsviya....@weizmann.ac.il>
Date: November 28, 2016 at 8:05:33 AM CST
To: "w...@bcm.edu" <w...@bcm.edu>
Subject: FW: Missing parentheses in DaPar***CAUTION:*** This email is not from a BCM Source. Only click links or open attachments you know are safe.
Hi
I am trying to run the DaPar test dataset, but get a syntax error
[lvzvia@molgen DaPars_Test_Dataset]$ python ../src/DaPars_main.py DaPars_test_data_configure.txt
File "../src/DaPars_main.py", line 107
print "Please provide the configure file ..."
^
SyntaxError: Missing parentheses in call to 'print'
I am using python/3.5.1 and also tried python/3.5.2
I will appreciate your help.
Many thanks
Tsviya Olender,PhD
Dept. Molecular Genetics
Weizmann Institute of Science
Rehovot 761000, Israel
Office: +972-8-9342572
Mobile: +972-54-5762929
