ValueError: invalid literal for int() with base 10: '1.00995e+06'

[cheungx...@gmail.com]

Hi Zheng,
I have two files ,one is the input data and the other is IP data,they were trans into bedgragh format by genomeCoverageBed.
Then,I run :
python ./DaPars_main.py configure_file
and the log is:
-------------------------------------------------------
[Thu Nov 1 17:14:23 2018] Start Analysis ...
[Thu Nov 1 17:14:23 2018] Loading coverage ...
Traceback (most recent call last):
File "/DaPars_main.py", line 548, in <module>
De_Novo_3UTR_Identification_Loading_Target_Wig_for_TCGA_Multiple_Samples_Main(sys.argv)
File "DaPars_main.py", line 154, in De_Novo_3UTR_Identification_Loading_Target_Wig_for_TCGA_Multiple_Samples_Main
All_samples_Target_3UTR_coverages, All_samples_sequencing_depths, UTR_events_dict = Load_Target_Wig_files(All_Sample_files, Annotated_3UTR_file)
File "src/DaPars_main.py", line 507, in Load_Target_Wig_files
curr_sample_All_chroms_coverage_dict[chrom_name][1].append(int(fields[-1]))
ValueError: invalid literal for int() with base 10: '1.00995e+06'

----------------------------------------
I don't know how to deal with it,Do you know?

Thank you.

ZXT

[孙海峰]

HI ZXT：

 I meet the same problem with u,and i'm so anxious。have you solved it ? any help will be greatful! thanks very much !

 haife...@gmail.com

Sun Haifeng

在 2018年11月1日星期四 UTC+8下午5:24:52，cheungx...@gmail.com写道：

[habo...@uci.edu]

Hello,

I am encountering the same issue. Have you identified the problem?

Thanks!

[ZhengXia]

Did you try the github version?

https://github.com/ZhengXia/dapars/tree/master/src

The 507 line should look like this:

curr_sample_All_chroms_coverage_dict[chrom_name][1].append(int(float(fields[-1])))

Thanks,

Zheng

Thanks,

Zheng

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[habo...@uci.edu]

Thanks for the response,

I had downloaded from github version 0.9.1 which I thought was the newest version (https://github.com/ZhengXia/dapars/releases/download/v0.9.1/dapars_0.9.1.zip) but had to correct that line as well.

I also had the following issue:
File "/data/apps/python/2.7.15/lib/python2.7/site-packages/rpy2/robjects/packages.py", line 214, in __fil$
raise LibraryError(msg)
$thon symbol (format.perc -> format_perc while there is already format_perc)

which was corrected with the following in DaPars_main.py:
##Filtering
stats = importr('stats', robject_translations = {"format.perc": "format_perc2"})