docker error about robject.py

[Rita CC]

docker://biocontainers/danpos:v2.2.2_cv1

We have downloaded the v2.2.2_cv1 docker image and use singularity to run it.

And here is the error message that we got, when run

    singularity run danpos_v2.2.2_cv1_20190409.simg

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: During startup - 

  rpy2.rinterface.initr()

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: Warning messages:

  rpy2.rinterface.initr()

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: 1: Setting LC_CTYPE failed, using "C" 

  rpy2.rinterface.initr()

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: 2: Setting LC_COLLATE failed, using "C" 

  rpy2.rinterface.initr()

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: 3: Setting LC_TIME failed, using "C" 

  rpy2.rinterface.initr()

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: 4: Setting LC_MESSAGES failed, using "C" 

  rpy2.rinterface.initr()

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: 5: Setting LC_MONETARY failed, using "C" 

  rpy2.rinterface.initr()

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: 6: Setting LC_PAPER failed, using "C" 

  rpy2.rinterface.initr()

/usr/lib/python2.7/dist-packages/rpy2/robjects/robject.py:6: UserWarning: 7: Setting LC_MEASUREMENT failed, using "C" 

  rpy2.rinterface.initr()

danpos version 2.2.2

For a list of functions in danpos, please try:

python danpos.py -h

Do you have any suggestion?

Thanks,

Rita

[Saurabh Chaudhary]

Hi! Rita,

I am not an expert in programming. But I think you need to reinstall the upgraded version of rpy2 and try again. 

Please also have a look of a similar error in the following link:

https://stackoverflow.com/questions/33454777/not-able-to-source-r-file

I hope it helps.

Best wishes

Saurabh