dadi-user

Hello Abby, I'm sorry I don't have a very satisfying answer. My group's approach is

Hello dadi users! The 2025 Genomic History Inference Strategies Tournament (GHIST) is live at https:/

Hello Skye, No apologies needed. This is generally confusing. :-) For symmetric versus asymmetric

Hello Emma, Sorry for the slow reply. This is a subtle issue, and I don't think we have a great

Hello Fred, Sorry for the slow reply. I've been on vacation. I'm not deeply familiar with the

Hi Ryan, Thank you so much for your quick reply, I really appreciate it. Amazing, now it is clear.

Hi, I am writing to seek your expertise regarding an issue I've encountered while using dadi for

Hi Sarah, Replies below On Jul 1, 2025, at 11:20 AM, Sarah Babaei <sarahba...@gmail.com>

Hello Panagiotis, There is not currently a way to specify the optimization method in dadi-cli. If you

Hi Ryan, Thanks for clarifying down-projection, it really doesn't seem to be useful in this case.

Hello Hugo, This is a bit perplexing. If you have a well-fitting model with the unprojected data, I

Hi Ryan, That's correct - giving it a 2D sfs solved the problem (but run didn't converge but

Hi Ryan, Thank you for confirming that there isn't an issue with the computation procedure. You

Hi Ryan It worked!! Thank you very much. Maria El mar, 18 mar 2025 a las 13:43, Ryan Gutenkunst (<

Hello Mathilde, Sorry for the slow reply. I don't know about the complex generation structure;

Hello Lena, Sorry for the slow reply. I'm not super familiar with the Portik pipeline, so

Hello Morgan, This may occur if you often have missing data. For a site to enter the spectrum for 10

Hello Alexandra, It's not obvious to me where this issue could be arising. Can you send a subset

Hello Xiaobo, Once the data are parsed, it doesn't matter how many SNPs you have. So I would not

Hello Skye, You got the right email address. My apologies for not responding sooner; it fell of my

Hello Patrick, Sorry for the slow reply! I'm not sure what could be going with your analysis. The

Hello Yuanshu, See responses below. On Aug 22, 2024, at 9:18 AM, Yuanshu Pu <yuans...@evobio.eu

Hello Niloo, It looks like you're using some sort of external pipeline to drive dadi, so I can

Hello dadi users, The 2024 Genomic History Inference Strategies Tournament (GHIST) is live! If you

Hello Alejandro, This is caused by a recent change in scipy. The latest version of dadi on Bitbucket

Hello Alex, I think the issue is the use of (n1,n2) in the arguments list. It should be easy to fix.

Hello Ryan, Thank you very much for your input! That would make a lot of sense, as the U shape is

Hello Kat, The biggest outlier I see is the large excess of SNPs in the data versus model that are

Hi, I thought I'd update everyone in the group about how we (hopefully) resolved this issue. We

Hello dadi users, The paper describing donni, our new machine-learning approach to demographic