EnrichmentMap:RNA-Seq Release Announcement

[Mike Kucera]

The Bader Lab at the University of Toronto is pleased to announce the release of a new Cytoscape web-app called EnrichmentMap:RNA-Seq, which is now available at enrichmentmap.org

Performs Pathway Enrichment Analysis without needing to download any software

• Upload gene expression data as an RNA-Seq expression file, or a pre-ranked gene list.

• Enrichment analysis typically takes about 1-2 minutes.

Visualises the results as an EnrichmentMap Network

• Nodes represent gene-sets (pathways) and edges represent mutual overlap between gene-sets. 

• The network is structured so that similar gene sets are grouped together as clusters, easing enrichment result navigation and interpretation.

• Information about gene-sets and individual genes is browsable via data panels.

• Supports both light and dark modes (based on system setting).

• Supports touch devices.

Provides data and figures for export

• Results are saved as a stable link that can be shared with collaborators.

• The network figure is downloadable in both PNG and PDF formats.

• The gene ranks and pathway enrichment results are exportable as data tables. They can be imported into a spreadsheet program or into Cytoscape with the EnrichmentMap app.

For more information visit enrichmentmap.org and explore the Frequently Asked Questions (FAQ) section on the home page.