Hi,
I recommend you to use the last version of our Apps, that contain
improvements and bug fixes. We have included all ClueGO and
CluePedia functions in the last release. Which function you don't
find?
The Apps have help instructions (blue icons) that detail most of
the functions. You can see a more recent example on ClueGO in our
article: Mlecnik et al, J Proteomics 2018.
If ClueGO and CluePedia are both correctly installed, you will be
able to run the analysis. CluePedia is a plugin to ClueGO, and
once ClueGO started, you will see both Apps in the ClueGO panel
(Analysis Mode section).
Best