ClusterMaker app and community cluster Glay

[Esteban Durán Monge]

Hello, I will appreciate if you could orient me about how does "community cluster Glay" work? I already know that this a FastGreedy algorithm implementation, but I would like to know more about how the visualization layout works.

Thanks,

Esteban

[Scooter Morris]

On 06/13/2016 08:28 AM, Esteban Durán Monge wrote:

Hello, I will appreciate if you could orient me about how does "community cluster Glay" work? I already know that this a FastGreedy algorithm implementation, but I would like to know more about how the visualization layout works.

Hi Esteban,
    There are two visualizations possible (well, three if you include "none").  In the first case, a new network is created with only edges within clusters included.  When this is laid out the individual clusters are partitioned and ordered by size, then each cluster is laid out using a force-directed layout.  The second option is like the first, but it adds all of the edges between clusters back in after the fact.

-- scooter

Thanks,

Esteban

--
You received this message because you are subscribed to the Google Groups "cytoscape-helpdesk" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-helpd...@googlegroups.com.
To post to this group, send email to cytoscape...@googlegroups.com.
Visit this group at https://groups.google.com/group/cytoscape-helpdesk.
For more options, visit https://groups.google.com/d/optout.

[Esteban Durán Monge]

Thank you for your answer Scooter.

El lunes, 13 de junio de 2016, 9:17:38 (UTC-7), Scooter Morris escribió:

On 06/13/2016 08:28 AM, Esteban Durán Monge wrote:

Hello, I will appreciate if you could orient me about how does "community cluster Glay" work? I already know that this a FastGreedy algorithm implementation, but I would like to know more about how the visualization layout works.

Hi Esteban,
    There are two visualizations possible (well, three if you include "none").  In the first case, a new network is created with only edges within clusters included.  When this is laid out the individual clusters are partitioned and ordered by size, then each cluster is laid out using a force-directed layout.  The second option is like the first, but it adds all of the edges between clusters back in after the fact.

-- scooter

Thanks,

Esteban

--
You received this message because you are subscribed to the Google Groups "cytoscape-helpdesk" group.

To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-helpdesk+unsub...@googlegroups.com.