Custom background gene list for enrichment analysis - STRING App

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mait...@gmail.com

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Mar 6, 2018, 8:41:15 AM3/6/18
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I am using STRING App in Cytoscape for enrichment analysis and clustering.

However, I cannot find a way of loading custom background gene list to do the enrichment analysis. I know there is a way of doing this in the STRING website, however, I want to use STRING within Cytoscape for personal reasons/preference.

Many thanks.

Scooter Morris

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Mar 6, 2018, 9:45:19 AM3/6/18
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Greetings,

    At this point, there is no way to use a custom background for
STRING enrichment analysis.   Alternative backgrounds are definitely on
the list, however!

-- scooter


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