Co expression network

[mail....@gmail.com]

Hi

I have the correlation values of the LncRNAs and the genes that are highly correlated with each LncRNAs. I would like to create a co-expression network from such data. How can I do that.? I also have the expression values for both- LncRNAs and the genes.

Thanks.

[Alex Pico]

Hi,

I haven’t done this myself, but I think the place to start is with the clusterMaker2 app (http://apps.cytoscape.org/apps/clustermaker2) and the menu option: “Create Correlation Network from Node Attributes”. Let us know if you get it working and share the steps!  It would help us make a tutorial and demo video, etc.

 - Alex

--
You received this message because you are subscribed to the Google Groups "cytoscape-helpdesk" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-helpd...@googlegroups.com.
To post to this group, send email to cytoscape...@googlegroups.com.
Visit this group at https://groups.google.com/group/cytoscape-helpdesk.
To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-helpdesk/cebcb422-b5bb-4519-afb7-d8435a1b6e79%40googlegroups.com.
For more options, visit https://groups.google.com/d/optout.