Could not Parse Error

[mikea...@gmail.com]

Hello,

I downloaded Cytoscape yesterday and I am receiving the Could Not Parse xgmml File message when I try to import a SSN. Any tips for me? I saw the following suggestion on github, but I am not sure what directory I need to be in to write the following command.

grep -v reaction_equation M0.vs.M1.module.xgmml > M0.vs.M1.new.xgmml

Thanks,
Mike

[piet molenaar]

Hi Mike,

Can you send an example of the problematic file?

Regards,

Piet 

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Piet Molenaar
piet...@gmail.com
Department of Oncogenomics, M1-131
Amsterdam University Medical Centers 
Meibergdreef 9
1105 AZ Amsterdam
the Netherlands

tel (+31) 20-5666592
fax (+31) 20-6918626

[mjindr...@gmail.com]

Hi Piet,

I apologize for the delay in my response. The Could Not Parse Error arose from a bug in the EFI EST software, not in Cytoscape. The bug has since been fixed and I no longer receive the error message. Thanks for your help.

Mike