Re: How to show module in a large network.

[Alexander Pico]

I think it was done using this app:

http://apps.cytoscape.org/apps/jactivemodules

Note there are separate download options for an older version for Cytoscape 2 and a newer version for Cytoscape 3.

 - Alex

On Tuesday, October 30, 2012 10:35:38 PM UTC-7, Zixing Wang wrote:

In the manual, it showed a figure of module location. However it does not tell us how to do it.

Here is the link of figure:

http://wiki.cytoscape.org/Cytoscape_User_Manual/Visual_Styles

thanks

Zixing

[Zixing Wang]

Thanks, Alex.  I installed cytoscape 3 and its app. it certainly pop up JactiveMnodules in the control panel with several sub panel, such as numeric node attributes, and advanced. However it does not have button to apply to the loaded network. Do you have any tutor link to show that figure? I got some gene pair based on regression, and wanna to demonstrate the different organization in different disease condition. It is very likely to the Figure 4 in the paper: TREEGL: reversed engineering tree-evolving gene network underlying developing biological lineages at Bioinformatics, 2011.

Any suggestion is great help.

Thanks.

Zixing