Trouble with search tool in Cytoscape 3.10.0

[Rocio Bussolini]

Hi,

I have a problem when using the search tool within Cytoscape 3.10.0 which I didn't have with previous versions. The search tool works perfectly when I'm using as query a relatively short list of names. But when the list is longer, while the task starts to run, it's not completed (the respective nodes aren't highlighted in the network).

I checked if the problem showed up in the task history, and all I got was a "Cannot parse (my query)". I did this exact same thing (same query list) in previous versions and never had an issue.

Does anyone know what could be the problem, or how to fix it?

Thank you for your time!

Rocío

[Alex Pico]

Hi Rocio,

Please share you query or example queries that are failing for you. Reproducing the error is typically our first step towards diagnosing and fixing an issue.

Thanks for reporting this!
- Alex

[Alexander Pico]

The query:

> I'm using Cytoscape shared names as queries. It's quite a long list, but I've searched this same amount of shared names (and even more) on the same netwrok file in the past and it has always worked.


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Thanks for your time once again!
Rocío

> On Sep 1, 2023, at 10:44 AM, Alex Pico <alex...@gladstone.ucsf.edu> wrote:
>
> Hi Rocio,

[Scooter Morris]

Hi Rocio,

What database are you searching?

-- scooter