Cytoscape will not properly save CLUEGO files anymore (rather, it saves but will not reopen)

[Elena MacFarlane]

I ran ClueGo and created (and saved) a ClueGo file. This has always worked fine for me previously (I know I have to save as ClueGo to retain the information).

However, today, when I try to re-open my Cluego Session, I get this error message.

I tried uninstalling and installing everything again, same problem.

One clue is that the "save as ClueGo" isn't available under the File Tab, and I saved instead using the icon...it looked like it was processing it correctly, but I guess it did not.

[Scooter Morris]

Greetings,

I notice the same thing -- the only thing I can think of is the update that they made for 3.10 removed some things.   You could try to reach out to the ClueGO folks -- they are usually quite responsive.

-- scooter

[Elena MacFarlane]

I could not get the support contact email from Cytoscape ClueGo page— it goes to a blank page…

What is best contact?

Also, is there any other ClueGo-like plug in you recomend for “Differentail Enrichment” analysis?

Thank you!

Elena

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[a.w...@uni-bayreuth.de]

Hi @elenamac...

I am experiencing the same issue. Did you find a way to solve it?

I tried to reach out to one of the ClueGO developers, but it seems that they are no longer working at the institute listed on the ClueGO website. 

ClueGO is (was) a geat app, it would be too bad not using it in the future...

Best, 

[Elena MacFarlane]

No unfortunately I did not find a solution.

Elena

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[Christopher Churas]

Hi,

I am also getting the same error when attempting to load a cluego file. 

I did some digging and this fails for Cytoscape versions 3.10.4, 3.10.3, 3.10.2, but this works in

older versions.

As a work around, the 3.10.1 and 3.10.0 versions of Cytoscape DO work for me.

I plan to take a look at the Cytoscape code base and see what changes we did on our end that is causing this

and look at possible resolutions.

chris

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