Importing an OTU network from QIIME

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David Otasek

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Oct 1, 2018, 5:15:26 PM10/1/18

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Posted on behalf of Muneer:

Dear SirI am analyzing my 16S Amplicon data sets in QIIME, there i have generated the otu-network by creating the real-edge-table.txt and real_nodes_table.txt. However i want to create the network in window based cytoscape no in QIIME based. Please let me know how to import the files and in what format to import and finally how to change the file format so as to work smoothly in cytoscape.

Scooter Morris

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Oct 4, 2018, 10:58:56 AM10/4/18

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Basically, your read-edge-table.txt represents the network (connections between samples and OTUs) and the read_nodes_table.txt provides information about your nodes. See the tutorial here: http://qiime.org/tutorials/making_cytoscape_networks.html for how to import things into Cytoscape.