Re: Compare networks via script

[Alexander Pico]

NetworkAnalyzer does not have any CyCommands available, so it can not be scripted. This is an often requested feature for NetworkAnalyzer, so if anyone is interested in adding CyCommands to it, here are some docs:

http://chianti.ucsd.edu/Cyto-2_8_3/javadoc/cytoscape/command/CyCommandHandler.html

 - Alex

On Wednesday, August 29, 2012 8:48:53 AM UTC-7, jonathan wrote:

Hello, I'm looking for a way to create a script for Cytoscape that load two networks (sif format), obtain the difference and the intersection of them (using NetworkAnalyzer), and output the resulting networks as images. So far, I've found the commandTool plugin but I dont know how to call to NetworkAnalyzer.

Does anyone knows if this is possible?

Thank you in advance,

Jonathan