Gene network to give DyNets as input

[Giovanni Spirito]

Hello, I would like to compare two gene networks with DyNets. I produced 2 gene networks with the GeneMania app in Cytoscape, but  when I use them as input for DyNets analysis i get this error:

use createListcolumn() to create List columns instead of createcolumn for column '<name of the column>'.

What does that mean?

How should I produce gene networks for DyNets? (I have two lists of gene names)

Thank you in advance.

[Scooter Morris]

Hi Giovanni,

    Sounds like GeneMania gave you some networks that have Lists in columns and DyNets is having problems with those.  I would suggest importing the networks into Cytoscape directly, removing the list columns and then exporting them again.   In the meantime, you may want to e-mail the authors of the app directly -- they are usually very responsive.

-- scooter