Hello -- I am using jActiveModules with Cytoscape 3.6 to identify active subnetworks in an interaction network generated by the CHAT plugin. I would like to see the z-scores for each module. The jActiveModules help document at
https://github.com/idekerlab/jActiveModules/wiki/Help says the following:
"Shortly, the Results panel will appear, as illustrated in Figure 5. This window contains a table in which each row represents one putative module, listed according to the number of nodes, and an associated z-score. Z-scores greater than 3.0 are generally considered significant."
- I don't see this in any tab on my Results panel even after selecting any of the jActiveModules-generated networks in the control panel. The Results panel still only displays the original CHAT network. How do I find the z-scores?
- The node table contains a column with the activepathScore for each node/module. How should this be interpreted?
- In general, the help documentation cited above seems a bit out of date (for example, there is no figure on that page). Is there a newer reference or manual available for jActiveModules someplace?
Thanks,
Erik