Compound nodes in Cytoscape 3?

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Bill Duddy

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Apr 15, 2014, 9:52:51 AM4/15/14
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I was wondering why we can create compound nodes (e.g. http://cytoscapeweb.cytoscape.org/demos/compound) in Cytoscape.js and Cytoscape Web but not Cytoscape 3. Are there plans to implement this in Cytoscape 3?
Many thanks,
Bill

Scooter Morris

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Apr 15, 2014, 12:05:38 PM4/15/14
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Hi Bill,
    Some aspects of "compound nodes" exist in the groups interface in Cytoscape 3.  You can group nodes and collapse the groups, but set the collapsed groups to show as a nested network.   The cytoscape.js compound nodes features which allow you to manipulate the nodes inside of a compound node and resize the compound node as a result is difficult to implement in the Cytoscape 3 rendering engine, which was designed with a focus on very large networks.  The feature request is on the list, but I'm not sure it will make Cytoscape 3.2.

-- scooter
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