calculate similarity between list of compounds

[Nagasai Hemasree]

Hi I have a list of compounds with the names and thier smiles. I have to calculate the similarity between the list of compounds using chemviz2. I imported the the same as network and tables with no edges. But I couldnot see the nodes but the tanimoto index appears. The files doesnot contain any names. Kindly help ,me out

[Scooter Morris]

Hi Nagasai,

   I'm a little confused about what you are trying to achieve.  If you have a list of compounds with the names and their smiles, you could import that list as a network, with the names as the source column and the smiles strings as a source attribute.  Note that you will not specify a target column.  Essentially, you are getting a network with no edges.  Then, you can use chemViz2 to create a new network by doing a "Create Similarity Network"  The new network should have all of the names and smiles strings.

-- scooter

[Nagasai Hemasree]

I created a network with no edges. But I couldn't get any similarly. I will repeat the same with you suggestion and check it once again. Thank you scooter.

--
You received this message because you are subscribed to the Google Groups "cytoscape-helpdesk" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-helpd...@googlegroups.com.
To post to this group, send email to cytoscape...@googlegroups.com.
Visit this group at https://groups.google.com/group/cytoscape-helpdesk.
To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-helpdesk/ab9bc043-2a7d-4659-9424-3572f4e1809a%40googlegroups.com.
For more options, visit https://groups.google.com/d/optout.