How to compare several matrices in cytoscape

[youenn jezequel]

Hi,

I have 6 different matrices with the same animal behaviours in each. I would like to know how to compare them, and more generally how could I quantify their closeness ? Is there an app to do that ?

Thank you very much for your answer,

Youenn.

[Srikanth B]

Hi  Youenn,

If you want to analyze the above matrices from a network point of view

- You need to decide what represents a node and what represents an edge.   
- And then you could have the raw matrices as adjacency matrices and then use Amatreader (http://apps.cytoscape.org/apps/amatreader) to import the networks into Cytoscape.
- After that, you could run Network analyzer(http://apps.cytoscape.org/apps/networkanalyzer) (or) Centiscape(http://apps.cytoscape.org/apps/centiscape) to get a bunch of properties of each network and you could probably(https://www.researchgate.net/post/How_can_I_measure_similarity_between_two_networks) use them to quantify closeness for a given pair of networks which translates to the corresponding matrices. 

If you want to analyze the matrices similarity/distance directly, 
- https://math.stackexchange.com/questions/507742/distance-similarity-between-two-matrices

Thanks,

Srikanth.

--
You received this message because you are subscribed to the Google Groups "cytoscape-helpdesk" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-helpd...@googlegroups.com.
To post to this group, send email to cytoscape...@googlegroups.com.
Visit this group at https://groups.google.com/group/cytoscape-helpdesk.
To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-helpdesk/c00164e6-f13b-405f-a4ee-726653d68dfb%40googlegroups.com.
For more options, visit https://groups.google.com/d/optout.