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juanj...@gmail.com
Aug 15, 2018, 1:13:57 AM8/15/18
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How can I import protein networks from Biodrid to cytoscape? I have had problems with this because when I did it the interactions don´t appear correctly. PLEASE HELP ME.
Pratt, Dexter
Aug 15, 2018, 4:18:38 PM8/15/18
to cytoscape...@googlegroups.com
One option is to use the BioGRID networks available on NDEx:
http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb
If you have the latest Cytoscape (3.6.1) running on your desktop while browsing one of the BioGRID networks then you will see a Cytoscape logo button in the lower right that will enable you to open the network in Cytoscape.
Please, note, however that some of these networks are very large and will load slowly. For example the human protein-protein interaction network has 407237 edges - it took a few minutes to open when I tested it just now.
On 8/14/18, 10:13 PM, "cytoscape...@googlegroups.com on behalf of juanj...@gmail.com" <cytoscape...@googlegroups.com on behalf of juanj...@gmail.com> wrote:
How can I import protein networks from Biodrid to cytoscape? I have had problems with this because when I did it the interactions don´t appear correctly. PLEASE HELP ME.
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http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb
If you have the latest Cytoscape (3.6.1) running on your desktop while browsing one of the BioGRID networks then you will see a Cytoscape logo button in the lower right that will enable you to open the network in Cytoscape.
Please, note, however that some of these networks are very large and will load slowly. For example the human protein-protein interaction network has 407237 edges - it took a few minutes to open when I tested it just now.
On 8/14/18, 10:13 PM, "cytoscape...@googlegroups.com on behalf of juanj...@gmail.com" <cytoscape...@googlegroups.com on behalf of juanj...@gmail.com> wrote:
How can I import protein networks from Biodrid to cytoscape? I have had problems with this because when I did it the interactions don´t appear correctly. PLEASE HELP ME.
You received this message because you are subscribed to the Google Groups "cytoscape-helpdesk" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-helpd...@googlegroups.com.
To post to this group, send email to cytoscape...@googlegroups.com.
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To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-helpdesk/c25867e0-c5fd-4c70-9222-39b26e32a860%40googlegroups.com.
For more options, visit https://groups.google.com/d/optout.
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