Problem with Cytoscape Download

[Elena.F...@chanelusa.com]

Hello,

We have problem with downloading Cytoscape program.  I got the error message (please see the message on my desktop). Could you please advise how I can download the Cytoscape program?

Best regards,
Elena Fedorova

Elena Fedorova
Skin Cell Biology Lab
Chanel, Inc.
876 Centennial Ave.
Piscataway, NJ 08855
Tel. (732) 980-2133
Fax: (732) 980-2095
e-mail: elena.f...@chanelusa.com

[Johannes]

Hi,

You stumbled across a common problem that we are attempting to fix in
the next release (2.8.2). You can either wait for the new release,
hopefully no more than a couple of weeks, or, go into the Cytoscape
installation directory and edit "Cytoscape.vmoptions". You can try
lowering the JVM heap size parameter (-Xmx). 768 MB should work and
maybe even more. You'd specify that as -Xmx768m.

> e-mail: elena.fedor...@chanelusa.com
>
>  image_gif_part
> 757KViewDownload

[Elena.F...@chanelusa.com]

Thank you.

Elena Fedorova
Chanel, Inc.

e-mail: elena.f...@chanelusa.com

Johannes <rusc...@gmail.com> Sent by: cytoscape...@googlegroups.com 06/22/2011 11:53 AM Please respond to cytoscape...@googlegroups.com

To cytoscape-helpdesk <cytoscape...@googlegroups.com> cc Subject [cytoscape-helpdesk] Re: Problem with Cytoscape Download

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[Paul McGrath]

I have had the same error.  Has anyone a solution.

Thanks

Paul

 

 

------------------------------

Paul McGrath,

IT Manager,

Leeds Institute of Molecular Medicine,

St James's University Hospital,

Beckett Street, Leeds, LS9 7TF, UK

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[边阳阳]

 Do as i show in the picture, change 1500M to 1000M, then double the gen-vmoptions, run it, then start the cytoscape, you will solve the problem.

--

Yangyang Bian
Division of Biotechnology,
Dalian Institute of Chemical Physics,
Chinese Academy of Sciences
457 Zhongshan Road, Dalian, China (Zip Code:116023)
Phone (fax):86-411-84379630

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[Paul McGrath]

The problem with ‘JVM could not be started’ was that my PCs are in an AD and the users do not have permissions to create the vmoptions file.  I had to run it once as admin and then they could use it.

Paul

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[Sarah]

Hello,

I have the same problem when trying to open Cytoscape.exe.
When I try Cytoscape.bat, a window just pop-up and closes immediatly.
The same happens when I try to access gen_vmoptions, so I can not
change the JVM heap size parameter.
Is there another solution? Or should I wait for the new release?

Thank you.

Regards,

Sarah Moyon
Department of Veterinay Medicine, Centre for Brain Repair
University of Cambridge
Madingley Rd, Cambridge, CB2 0ES, UK