Spring Embedded Bug 0002089

[Rono]

I'm seeing this bug with 2.6.3, so I searched the Bug Tracker and
found a description there. The problem is that the last update says
that it's been fixed, but there's no instructions, notes, or downloads
to implement the fix. Ho do I fix the spring embedded function?

[Scooter Morris]

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Hi Rono,
The main recommendation I made in the bug was to use Force Directed,
which uses significantly less memory. There is no real way to fix the
out-of-memory problem, but I did fix it so that it doesn't throw an NPE
exception. The fix will be in the next release of Cytoscape - 2.7.0, or
you can build a fresh Cytoscape from source. Alternatively, if you
really want to use Spring Embedded, you can allocate Cytoscape a *lot*
of memory. I was able to get BINDyeast.sif to layout using
Spring-Embedded on a Cytoscape instance that had 8GB allocated.

-- scooter

[nitin kumar]

Hello To everyone,

I am very new to Cytoscape and not at all an expert in this. I want some help regarding the edge thickness in cytoscape. I have a network which I can dray now I want to make edges thick on the basis of some values. Could any one please help me how can I do this.

Thanks in advance,

nitin kumar