PB installation CS 3.9.0 on Ubuntu 20.04

[Gilles Marodon]

Hello although the checker script linux.sh is running fine and tell me that I'm ready to go, the Cytoscape installer.sh script will throw this message:

java.lang.NoClassDefFoundError: Could not initialize class java.awt.Toolkit

at java.desktop/java.awt.Component.<clinit>(Component.java:621)

at java.desktop/javax.swing.ImageIcon$2.run(ImageIcon.java:130)

at java.desktop/javax.swing.ImageIcon$2.run(ImageIcon.java:128)

at java.base/java.security.AccessController.doPrivileged(Native Method)

at java.desktop/javax.swing.ImageIcon.createNoPermsComponent(ImageIcon.java:127)

at java.desktop/javax.swing.ImageIcon$1.run(ImageIcon.java:106)

at java.desktop/javax.swing.ImageIcon$1.run(ImageIcon.java:103)

at java.base/java.security.AccessController.doPrivileged(Native Method)

at java.desktop/javax.swing.ImageIcon.<clinit>(ImageIcon.java:103)

at com.install4j.runtime.installer.frontend.GUIHelper.loadIcon(GUIHelper.java:193)

at com.install4j.runtime.installer.frontend.GUIHelper.<clinit>(GUIHelper.java:52)

at com.install4j.runtime.installer.helper.InstallerUtil.reportException(InstallerUtil.java:1235)

at com.install4j.runtime.installer.Installer.main(Installer.java:47)

at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)

at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.base/java.lang.reflect.Method.invoke(Method.java:566)

at com.exe4j.runtime.LauncherEngine.launch(LauncherEngine.java:85)

at com.install4j.runtime.launcher.UnixLauncher.start(UnixLauncher.java:66)

at install4j.Installer4261306261.main(Unknown Source)

java.lang.NoClassDefFoundError: Could not initialize class java.awt.Toolkit

at java.desktop/javax.swing.ImageIcon.<init>(ImageIcon.java:198)

at java.desktop/javax.swing.ImageIcon.<init>(ImageIcon.java:217)

at com.install4j.runtime.installer.frontend.GUIHelper.loadIcon(GUIHelper.java:193)

at com.install4j.runtime.installer.frontend.GUIHelper.<clinit>(GUIHelper.java:52)

at com.install4j.runtime.installer.helper.InstallerUtil.reportException(InstallerUtil.java:1235)

at com.install4j.runtime.installer.Installer.main(Installer.java:47)

at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)

at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.base/java.lang.reflect.Method.invoke(Method.java:566)

at com.exe4j.runtime.LauncherEngine.launch(LauncherEngine.java:85)

at com.install4j.runtime.launcher.UnixLauncher.start(UnixLauncher.java:66)

at install4j.Installer4261306261.main(Unknown Source)java.lang.NoClassDefFoundError: Could not initialize class java.awt.Toolkit

at java.desktop/java.awt.Component.<clinit>(Component.java:621)

at java.desktop/javax.swing.ImageIcon$2.run(ImageIcon.java:130)

at java.desktop/javax.swing.ImageIcon$2.run(ImageIcon.java:128)

at java.base/java.security.AccessController.doPrivileged(Native Method)

at java.desktop/javax.swing.ImageIcon.createNoPermsComponent(ImageIcon.java:127)

at java.desktop/javax.swing.ImageIcon$1.run(ImageIcon.java:106)

at java.desktop/javax.swing.ImageIcon$1.run(ImageIcon.java:103)

at java.base/java.security.AccessController.doPrivileged(Native Method)

at java.desktop/javax.swing.ImageIcon.<clinit>(ImageIcon.java:103)

at com.install4j.runtime.installer.frontend.GUIHelper.loadIcon(GUIHelper.java:193)

at com.install4j.runtime.installer.frontend.GUIHelper.<clinit>(GUIHelper.java:52)

at com.install4j.runtime.installer.helper.InstallerUtil.reportException(InstallerUtil.java:1235)

at com.install4j.runtime.installer.Installer.main(Installer.java:47)

at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)

at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.base/java.lang.reflect.Method.invoke(Method.java:566)

at com.exe4j.runtime.LauncherEngine.launch(LauncherEngine.java:85)

at com.install4j.runtime.launcher.UnixLauncher.start(UnixLauncher.java:66)

at install4j.Installer4261306261.main(Unknown Source)

java.lang.NoClassDefFoundError: Could not initialize class java.awt.Toolkit

at java.desktop/javax.swing.ImageIcon.<init>(ImageIcon.java:198)

at java.desktop/javax.swing.ImageIcon.<init>(ImageIcon.java:217)

at com.install4j.runtime.installer.frontend.GUIHelper.loadIcon(GUIHelper.java:193)

at com.install4j.runtime.installer.frontend.GUIHelper.<clinit>(GUIHelper.java:52)

at com.install4j.runtime.installer.helper.InstallerUtil.reportException(InstallerUtil.java:1235)

at com.install4j.runtime.installer.Installer.main(Installer.java:47)

at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)

at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.base/java.lang.reflect.Method.invoke(Method.java:566)

at com.exe4j.runtime.LauncherEngine.launch(LauncherEngine.java:85)

at com.install4j.runtime.launcher.UnixLauncher.start(UnixLauncher.java:66)

at install4j.Installer4261306261.main(Unknown Source)

I use a macbook pro with dualOS macCatalina and Ubuntu 20.04 but I think this has nothing to do with my pb.  I installed OpenJDK from Adoptium and dowloaded and installed Teremium 11 LTS.  

export JAVA_HOME=jdk-11.0.13+8/

export PATH=$JAVA_HOME/bin:$PATH

Here is the result of the linux.sh script checker: 

##### Cytoscape System Requirements Checker for Linux #####

 - Target Cytoscape version: 3.9.0

 - Your Shell: bash

===== Checking Distribution =====

 - Linux Distribution: Ubuntu

 - Version: 20.04

 - Target Platform: x86_64

 - Pass: Distribution = Ubuntu

 - Pass: OS Version = 20.04

===== Checking Java Version =====

 - Pass: Current Java Version = 11.0.11

===== Checking $JAVA_HOME =====

 - Pass: JAVA_HOME found: jdk-11.0.13+8/

===== Checking Connection to Cytoscape App Store =====

 - Checking connection to Cytoscape App Store...

apps.cytoscape.org has address 52.34.133.210

  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

                                 Dload  Upload   Total   Spent    Left  Speed

  0 50619    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0

 - Result: 200

 - Success!

----------------------------------------

 - Success!  You are ready to run Cytoscape 3.9.0

Any hints what I'm doing wrong? Many thanks

[Gilles Marodon]

I reinstall Java and everything works fine now. Please disregerd my post. Thanks and apologies