BinGO custom annotation

[Ksenia Zueva]

Hello,

I am trying to use BinGO with custom annotation file. I followed the instructions at http://www.psb.ugent.be/cbd/papers/BiNGO/Customize.html and produced a file (gene_association.salaris) like this:

(species=Gyrodactylus salaris) (type=GO_Full) (curator=GO)

cds.c10000_g1_i1|m.31448 = GO:0004674

cds.c10000_g1_i1|m.31448 = GO:0005524

cds.c10002_g1_i1|m.31451 = GO:0005506

cds.c10002_g1_i1|m.31451 = GO:0009055

cds.c10002_g1_i1|m.31451 = GO:0020037

 

, where the first column is my "gene names".

 I understood that gene names should not necessarily be IDs from established databases, however, BinGo does not respond. I would be grateful if somebody could point out what I am doing wrong. 

I work with non-model organism, so can't download the annotation file from Gene Ontology website directly. 

Thanks in advance!

Ksenia

[piet molenaar]

Hi Ksenia,

Since this concerns the specifics of the BinGO plugin you'd best contact the folks over there: http://www.psb.ugent.be/cbd/papers/BiNGO/Team.html

Cheers,

Piet

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Piet Molenaar
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Department of Oncogenomics, M1-131
Academic Medical Center
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