How to collect multiple networks together and color theim on different colors on cytoscape?

[aouiche...@yahoo.fr]

Dear all,

I have 10 sub networks and my goal is to draw them all together on one graph on Cytoscape with every subnetwork with a different color

I appreciate any help!

[Alex Pico]

There are few different ways to approach this. I assume you already have these 10 network loaded into separate collections in Cytoscape. If so, then you can do the following:

1) add a new column to the node table for each network, called "subnetwork" for example. See "+" icon in Table Panel for adding new columns.

2) fill in values (e.g., 1-10) for all the nodes foe each network to serve as a subnetwork identifier after they are merged. See right-click option to copy one entry to all other

 rows in a given column.

3) perform merge via Tools menu.

4) open Styles tab and set discrete color map to your "subnetwork" column.

 - Alex

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[Barry Demchak]

Hi, Alex and aouichechaimaa ...

... Forwarding this to Cytoscape...@googlegroups.com ... please continue there. 

The Cytoscape-Discuss forum is inactive now.

Thanks!

On Sat, Jul 15, 2017 at 2:28 PM, Alex Pico <alex...@gladstone.ucsf.edu> wrote:

There are few different ways to approach this. I assume you already have these 10 network loaded into separate collections in Cytoscape. If so, then you can do the following:

1) add a new column to the node table for each network, called "subnetwork" for example. See "+" icon in Table Panel for adding new columns.

2) fill in values (e.g., 1-10) for all the nodes foe each network to serve as a subnetwork identifier after they are merged. See right-click option to copy one entry to all other

 rows in a given column.

3) perform merge via Tools menu.

4) open Styles tab and set discrete color map to your "subnetwork" column.

 - Alex

On Sat, Jul 15, 2017 at 5:06 AM, aouichechaimaa via cytoscape-discuss <cytoscape-discuss@googlegroups.com> wrote:

Dear all,

I have 10 sub networks and my goal is to draw them all together on one graph  on Cytoscape with every subnetwork with a different color

I appreciate any help!

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