Re: how to obtain edge weights

[Alexander Pico]

Hi Adrian,

"Edge weights" can represent a lot of different properties. It all depends on the dataset you are working with. If you just want arbitrary public data to use as edge weights so that you can run another algorithm, then I'd look at using one of the following apps:

http://apps.cytoscape.org/apps/with_tag/interactiondatabase

 - Alex

On Thursday, October 18, 2012 6:57:27 AM UTC-7, Adrian Johnson wrote:

Hi:

I obtained interactors for list 100 proteins. It is in the form of tab delim txt file. 

prot    interactor     edge weight

SRC   EGFR

SRC   MYB

SRC   NKB

How do I obtain the edge weights? I am totally naive and my aim is to run a random walk with restart application. 

thanks for your help in advance.

Adrian