Get existing cytoscape window from RCy3

[Ruth Isserlin]

Hi, 

I have created a network from R using commands but I want to modify the resulting network.  Is there a way with RCy3 to get the existing network so I can modify it?

Thanks, 

Ruth 

[Julia Gustavsen]

Hi Ruth,

I think based on your github issue you have found the function existing.CytoscapeWindow(), but if you are still having problems let us know. 

Cheers, Julia

[Ruth Isserlin]

Hi Julia, 

For some reason biocLite(“RCy3”) keeps installing version 1.0.1 but when I downloaded the package source and installed from the source it worked. 

Thanks, 

Ruth 

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[Julia Gustavsen]

Hi Ruth,

Glad to hear that it finally worked. One idea for the troubles might be that the latest release of Bioconductor works with R 3.3 and I think from your session info (https://github.com/tmuetze/Bioconductor_RCy3_the_new_RCytoscape/issues/17) you are running 3.2. 

Cheers, Julia 

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