To open 2nd .cys file Cytoscape 3.0.2

[jerry...@gmail.com]

Hi everyone,

 

How to open a network (a .cys file) when another one (another .cys file) was already opened.

 

Error:

Current session (all networks and tables) will be lost.  Do you want to continue?

 

Thanks,

Jerry

[Tim Hull]

You can't have two sessions open at the same time - a session can contain multiple networks, and loading one closes the existing session. If you save the current session, you can always reopen it though. Also, you can import a network into an existing session from an Excel/CSV/SIF file without losing your current session.

Hope this helps...

Tim

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[jerry...@gmail.com]

If I have two networks and I want to merge them what I can do with Cytoscape 3.0.2.  I could easily do this task in 2.8 version.

Thanks,

Jerry

[piet molenaar]

Hi,

Tools>Merge Networks provides the merge functionality.

Hope this helps,

Piet

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Piet Molenaar
piet...@gmail.com
Department of Oncogenomics, M1-131
Academic Medical Center
University of Amsterdam
Meibergdreef 9
1105 AZ Amsterdam
the Netherlands

tel (+31) 20-5666592
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[jerry...@gmail.com]

Hi,

OK, but there are two .cys files; I need to open them first and then merge them.  How could I do this in Cytoscape 3.0.2?

Thanks,

Jerry

[piet molenaar]

You would have to export the networks from one of the sessions as separate networks using the File>Export>Network option. Preferably use the .xgmml option since that preserves layout. Open the other session and use File>Import>Network to import the saved networks. You'll than be able to merge these in the same session

Hope this helps,

Piet

Btw; it was not possible to merge between sessions in Cytoscape 2.8 either

piet.amc@gmail.com