[cytoscape/cytoscape-impl] 9b6936: Label Selection: Fix fit content to respect rotati...

[Mike Kucera]

Branch: refs/heads/develop
Home: https://github.com/cytoscape/cytoscape-impl
Commit: 9b69367ea15790778309b79c142915124865948b
https://github.com/cytoscape/cytoscape-impl/commit/9b69367ea15790778309b79c142915124865948b
Author: Mike Kucera <mikek...@gmail.com>
Date: 2021-05-11 (Tue, 11 May 2021)

Changed paths:
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/debug/FrameRatePanel.java
R ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DLabelSelection.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DNodeDetails.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
A ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/LabelSelection.java
A ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/LabelSelectionManager.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NetworkPicker.java
R ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/AnnotationSelectionCanvas.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/CompositeImageCanvas.java
A ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/SelectionCanvas.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/NodeLabelChangeEdit.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphRenderer.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/NodeDetails.java

Log Message:
-----------
Label Selection: Fix fit content to respect rotation. WIP.


Commit: 0efd34ebce55e9863147298c5a443b376c1b75af
https://github.com/cytoscape/cytoscape-impl/commit/0efd34ebce55e9863147298c5a443b376c1b75af
Author: Mike Kucera <mikek...@gmail.com>
Date: 2021-05-11 (Tue, 11 May 2021)

Changed paths:
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/LabelSelection.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/LabelSelectionManager.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NetworkPicker.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/CompositeImageCanvas.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/NetworkTransform.java

Log Message:
-----------
Label Selection: draw label selection rectangles


Commit: 5302aa152402be47a03e2622284d842e0041e717
https://github.com/cytoscape/cytoscape-impl/commit/5302aa152402be47a03e2622284d842e0041e717
Author: Mike Kucera <mikek...@gmail.com>
Date: 2021-05-13 (Thu, 13 May 2021)

Changed paths:
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/LabelSelection.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/LabelSelectionManager.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NetworkPicker.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AnnotationSelection.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/NodeLabelChangeEdit.java

Log Message:
-----------
Label Selection: basic dragging and rotation


Commit: b701e095f1508d26491b27cabc845befd8554e0f
https://github.com/cytoscape/cytoscape-impl/commit/b701e095f1508d26491b27cabc845befd8554e0f
Author: Mike Kucera <mikek...@gmail.com>
Date: 2021-05-14 (Fri, 14 May 2021)

Changed paths:
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/LabelSelectionManager.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/AnnotationEdit.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/CompositeCyEdit.java
A ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/LabelEdit.java
R ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/NodeLabelChangeEdit.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/ViewChangeEdit.java

Log Message:
-----------
Label Selection: get undo/redo to work properly


Commit: 30f6114093400fd724910df3ee78318219210803
https://github.com/cytoscape/cytoscape-impl/commit/30f6114093400fd724910df3ee78318219210803
Author: Mike Kucera <mikek...@gmail.com>
Date: 2021-05-14 (Fri, 14 May 2021)

Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/CyActivator.java
M app-impl/src/main/java/org/cytoscape/app/internal/CyAppAdapterImpl.java
M app-impl/src/main/java/org/cytoscape/app/internal/action/AppManagerAction.java
M app-impl/src/main/java/org/cytoscape/app/internal/action/CitationsAction.java
M app-impl/src/main/java/org/cytoscape/app/internal/action/UpdateNotificationAction.java
M app-impl/src/main/java/org/cytoscape/app/internal/event/AppsChangedEvent.java
M app-impl/src/main/java/org/cytoscape/app/internal/event/AppsChangedListener.java
M app-impl/src/main/java/org/cytoscape/app/internal/event/UpdatesChangedEvent.java
M app-impl/src/main/java/org/cytoscape/app/internal/event/UpdatesChangedListener.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppDisableException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppDownloadException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppInstallException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppLoadingException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppParsingException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppStartupException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppStoppingException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppUninstallException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppUnloadingException.java
M app-impl/src/main/java/org/cytoscape/app/internal/exception/AppUpdateException.java
M app-impl/src/main/java/org/cytoscape/app/internal/manager/App.java
M app-impl/src/main/java/org/cytoscape/app/internal/manager/AppDependencyNode.java
M app-impl/src/main/java/org/cytoscape/app/internal/manager/AppManager.java
M app-impl/src/main/java/org/cytoscape/app/internal/manager/AppParser.java
M app-impl/src/main/java/org/cytoscape/app/internal/manager/BundleApp.java
M app-impl/src/main/java/org/cytoscape/app/internal/manager/SimpleApp.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/DownloadStatus.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/ResultsFilterer.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/Update.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/UpdateManager.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/WebApp.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/WebQuerier.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/AddAccessControlAllowOriginHeaderAfterResponse.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/AddAllowOriginHeader.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/AppGetResponder.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpAfterResponse.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpBeforeResponse.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpRequest.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpRequestImpl.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpResponder.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpResponse.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpResponseFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpResponseFactoryImpl.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpd.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpdFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpdFactoryImpl.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/LocalhostServerSocketFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/OriginOptionsBeforeResponse.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/ScreenOriginsBeforeResponse.java
M app-impl/src/main/java/org/cytoscape/app/internal/net/server/ServerSocketFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/AppManagerDialog.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/AppManagerMediator.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/CheckForUpdatesPanel.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/CitationsDialog.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/CurrentlyInstalledAppsPanel.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/InstallAppsPanel.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/downloadsites/DownloadSite.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/downloadsites/DownloadSitesManager.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/downloadsites/ManageDownloadSitesDialog.java
M app-impl/src/main/java/org/cytoscape/app/internal/util/AppUtil.java
M app-impl/src/main/java/org/cytoscape/app/internal/util/DebugHelper.java
M app-impl/src/test/java/org/cytoscape/app/internal/CyAppAdapterImplTest.java
M app-impl/src/test/java/org/cytoscape/app/internal/net/WebQuerierTest.java
M app-impl/src/test/java/org/cytoscape/app/internal/net/server/AddAllowOriginHeaderTest.java
M app-impl/src/test/java/org/cytoscape/app/internal/net/server/CyHttpdImplTest.java
M app-impl/src/test/java/org/cytoscape/app/internal/net/server/OriginOptionsBeforeResponseTest.java
M app-impl/src/test/java/org/cytoscape/app/internal/net/server/ScreenOriginsBeforeResponseTest.java
M app-impl/src/test/java/org/cytoscape/app/internal/ui/downloadsites/DownloadSitesManagerTest.java
M app-impl/src/test/java/org/cytoscape/app/internal/util/AppUtilTest.java
M application-impl/src/main/java/org/cytoscape/application/internal/CyActivator.java
M application-impl/src/main/java/org/cytoscape/application/internal/CyApplicationConfigurationImpl.java
M application-impl/src/main/java/org/cytoscape/application/internal/CyVersionImpl.java
M application-impl/src/main/java/org/cytoscape/application/internal/ShutdownHandler.java
M application-impl/src/test/java/org/cytoscape/application/internal/CyApplicationManagerImplTest.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/CommandExecutorImpl.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/CommandExecutorTask.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/CommandExecutorTaskFactoryImpl.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/CommandFileExecutorTask.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/CommandStringsExecutorTask.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/CyActivator.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/Executor.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/StringToModelImpl.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/TFExecutor.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/ArgHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/ArgHandlerFactory.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/ArgRecorder.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/AvailableCommandsImpl.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/BasicArgHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/BasicArgHandlerFactory.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/dummies/DummyNetwork.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/dummies/DummyNetworkView.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/available/dummies/DummyTable.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BooleanTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedDoubleTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedFloatTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedIntTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedLongTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CharTunableHandlerImpl.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CommandTunableInterceptorImpl.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyIdentifiableStringTunableHandlerFactory.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyIdentifiableTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyNetworkTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyNetworkViewTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyTableTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/DoubleTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/EdgeListTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/FileTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/FloatTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/IntTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/ListMultipleTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/ListSingleTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/LongTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/NodeListTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/RowListTunableHandler.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/SimpleStringTunableHandlerFactory.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandlerImpl.java
M command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/URLTunableHandler.java
M command-executor-impl/src/test/java/org/cytoscape/command/internal/StringToModelTest.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/edit/ConnectSelectedNodesEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/edit/ConnectSelectedNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/edit/ConnectSelectedNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/AbstractCyWriter.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/TunableAbstractCyWriter.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/ViewWriter.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/graphics/ExportNetworkImageTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/AbstractLoadNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/CyNetworkViewWriter.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/CyNetworkWriter.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/ExportNetworkTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/ExportNetworkViewTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/ExportSelectedNetworkTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/GenerateNetworkViewsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/LoadMultipleNetworkFilesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/LoadMultipleNetworksTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/LoadNetworkFileTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/LoadNetworkFileTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/LoadNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/LoadNetworkURLTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/network/LoadNetworkURLTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/CyTableWriter.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/ExportNoGuiSelectedTableTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/ExportSelectedTableTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/ExportTableTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/NoGuiSelectExportTableTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/SelectExportTableTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/web/ExportAsWebArchiveTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/export/web/ExportAsWebArchiveTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/filter/SelectFilterTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/filter/SelectFilterTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/AbstractGroupTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/AddToGroupTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/AddToGroupTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/CollapseGroupTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/GetGroupTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/GetGroupTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/GroupEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/GroupNodeContextTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/GroupNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/GroupNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/ListGroupsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/ListGroupsTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/RemoveFromGroupTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/RemoveFromGroupTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/RenameGroupTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/RenameGroupTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/UnGroupNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/group/UnGroupNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/help/HelpTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideCommandTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideCommandTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideSelectedEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideSelectedNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideSelectedTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideUnselectedEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideUnselectedNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideUnselectedTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideUtils.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideAllEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideAllNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideAllTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideCommandTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideCommandTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideFromSelectionTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideSelectedEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideSelectedNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/layout/ApplyPreferredLayoutTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/layout/ApplyPreferredLayoutTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/layout/GetPreferredLayoutTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/layout/GetPreferredLayoutTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/layout/SetPreferredLayoutTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/layout/SetPreferredLayoutTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/AbstractCreationTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/CloneNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/CloneNetworkTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/DestroyNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/DestroyNetworkTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/GroupUtils.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewEmptyNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewEmptyNetworkTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewNetworkCommandTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewNetworkCommandTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewNetworkSelectedNodesEdgesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewNetworkSelectedNodesEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewNetworkSelectedNodesOnlyTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewNetworkSelectedNodesOnlyTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/network/RegisterNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AbstractGetTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AbstractPropertyTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddEdgeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddEdgeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddNodeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddNodeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/DeleteEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/DeleteSelectedNodesAndEdgesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/DeleteSelectedNodesAndEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetEdgePropertiesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetEdgeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetEdgeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetNetworkPropertiesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetNetworkTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetNodePropertiesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetNodeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetNodeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetPropertiesTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListEdgesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListEdgesTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListNetworksTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListNetworksTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListNodesTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListPropertiesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListPropertiesTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/RenameEdgeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/RenameEdgeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/RenameNodeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/RenameNodeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/SetCurrentNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/SetCurrentNetworkTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/SetEdgePropertiesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/SetNetworkPropertiesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/SetNodePropertiesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/SetPropertiesTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/proxysettings/ProxySettingsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/proxysettings/ProxySettingsTask2.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/proxysettings/ProxySettingsTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/AbstractSelectTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectAllEdgesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectAllNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectAllNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectAllTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectEdgesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/InvertSelectedNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/InvertSelectedNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectAllEdgesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectAllEdgesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectAllNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectAllNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectAllTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectConnectedNodesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectConnectedNodesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectionEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/AbstractOpenSessionTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/CySessionWriter.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/NewSessionTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/NewSessionTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/OpenSessionCommandTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/OpenSessionCommandTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/OpenSessionTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/OpenSessionTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/SaveSessionAsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/SaveSessionAsTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/session/SaveSessionTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/setcurrent/SetCurrentNetworkTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/setcurrent/SetCurrentNetworkTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/AbstractTableDataTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/AddRowTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/AddRowTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CopyValueToColumnEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CopyValueToColumnTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CopyValueToColumnTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateColumnTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateColumnTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateEdgeAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateNetworkAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateNetworkAttributeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateNodeAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateTableTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateTableTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DeleteColumnCommandTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DeleteColumnCommandTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DeleteColumnEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DeleteColumnTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DeleteColumnTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DeleteRowTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DeleteRowTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DeleteTableEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DestroyTableTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/DestroyTableTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetColumnTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetEdgeAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetNetworkAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetNetworkAttributeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetNodeAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetRowTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetRowTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetValueTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetValueTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/JoinTablesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/JoinTablesTaskTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListColumnsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListColumnsTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListEdgeAttributesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListNetworkAttributesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListNetworkAttributesTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListNodeAttributesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListRowsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListRowsTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListTablesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListTablesTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/MapGlobalToLocalTableTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/MapGlobalToLocalTableTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/MapTableToNetworkTablesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/MapTableToNetworkTablesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/MergeTablesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/MergeTablesTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/RenameColumnCommandTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/RenameColumnEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/RenameColumnTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/RenameColumnTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SaveColumn.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetEdgeAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetNetworkAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetNetworkAttributeTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetNodeAttributeTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetTableTitleTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetTableTitleTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetValuesTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetValuesTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/title/EditNetworkTitleTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/title/EditNetworkTitleTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/title/NetworkTitleEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/ColumnListTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/ColumnTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/ColumnTypeTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/ColumnValueTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/DataUtils.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/EdgeTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/NodeAndEdgeTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/NodeTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/RowTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/utils/TableTunable.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/CopyExistingViewTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/CreateNetworkViewEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/CreateNetworkViewTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/CreateNetworkViewTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/DestroyNetworkViewTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/DestroyNetworkViewTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/GetCurrentNetworkViewTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/GetCurrentNetworkViewTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/ListNetworkViewsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/ListNetworkViewsTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/SetCurrentNetworkViewTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/SetCurrentNetworkViewTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/UpdateNetworkViewTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/view/UpdateNetworkViewTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/ApplyVisualStyleTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/ApplyVisualStyleTaskFactoryimpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/ClearAllEdgeBendsFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/ClearAllEdgeBendsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/ExportVizmapTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/LoadVizmapFileTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/LoadVizmapFileTaskFactoryImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/VizmapWriter.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/AbstractZoomTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/FitContentEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/FitContentTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/FitContentTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/FitSelectedTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/FitSelectedTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/ZoomEdit.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/ZoomInTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/ZoomInTaskFactory.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/ZoomOutTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/zoom/ZoomOutTaskFactory.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/export/AbstractCyWriterTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/export/graphics/ExportNetworkImageTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/export/network/CyNetworkViewWriterTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/group/AbstractGroupTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/hide/HideSelectedEdgesTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/hide/HideSelectedNodesTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/hide/HideSelectedTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/hide/HideUtilsTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/hide/UnHideAllEdgesTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/hide/UnHideAllNodesTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/hide/UnHideAllTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/io/ViewWriterTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/loadnetwork/AbstractLoadNetworkTaskTester.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkFileTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkURLTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/network/CloneNetworkTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/network/DestroyNetworkTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/network/NewEmptyNetworkTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/network/NewNetworkSelectedNodesEdgesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/network/NewNetworkSelectedNodesOnlyTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/network/NewNetworkSelectedNodesOnlyTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/proxysettings/ProxySettingTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/proxysettings/ProxySettingsTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/AllFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/DeselectAllNodesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/InvertSelectedNodesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/SelectAllEdgesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/SelectAllNodesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/SelectConnectedNodesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/select/SelectFromFileListTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/session/NewSessionTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/session/NewSessionTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/session/OpenSessionTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/session/OpenSessionTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/session/SaveSessionAsTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/session/SaveSessionAsTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/session/SaveSessionTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/session/SaveSessionTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/setcurren/SetCurrentNetworkTaskFactoryImplTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/setcurren/SetCurrentNetworkTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/table/JoinTablesTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/table/MapTableToNetworkTableTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/table/MappingIntegrationTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/table/MergeDataTableTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/table/RenameColumnEditTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/title/EditNetworkTitleTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/title/EditNetworkTitleTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/title/NetworkTitleEditTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/view/CreateNetworkViewTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/view/DestroyNetworkViewTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/vizmap/ApplyVisualStyleTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/vizmap/LoadVizmapFileTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/FitContentEditTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/FitContentTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/FitContentTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/FitSelectedTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/FitSelectedTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/ZoomEditTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/ZoomInTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/ZoomInTaskTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/ZoomOutTaskFactoryTest.java
M core-task-impl/src/test/java/org/cytoscape/task/internal/zoom/ZoomOutTaskTest.java
M custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/image/MissingBitmapCustomGraphics.java
M custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/image/MissingImageCustomGraphics.java
M custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/image/MissingSVGCustomGraphics.java
M custom-graphics-internal/src/main/java/org/cytoscape/cg/model/AbstractURLImageCustomGraphics.java
M custom-graphics-internal/src/main/java/org/cytoscape/cg/model/CGComparator.java
M datasource-impl/src/main/java/org/cytoscape/io/datasource/internal/CyActivator.java
M datasource-impl/src/main/java/org/cytoscape/io/datasource/internal/DataSourceManagerImpl.java
M datasource-impl/src/main/java/org/cytoscape/io/datasource/internal/bookmarks/BookmarkDataSourceBuilder.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/CyObjectPositionPropertyEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/DArrowShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/DNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/Label.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ObjectPlacerControl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ObjectPlacerGraphic.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ObjectPositionCellRenderer.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ObjectPositionValueEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/PrintLOD.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/SelectModeAction.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ShowGraphicsDetailsTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ShowGraphicsDetailsTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/action/GraphicsDetailAction.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/dependency/EdgeColorDependencyFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/dependency/NodeSizeDependencyFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ColorIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/EdgeBendIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/FontFaceIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/NodeIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ObjectPositionIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/StrokeIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/TextIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeNodeViewTaskFactoryImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/BendFactoryImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/BendImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ContentChangeListener.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DEdgeDetails.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DLineType.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DNodeDetails.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingGraphLOD.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingGraphLODAll.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingNavigationRenderingEngineFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingRenderingEngineFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingVisualStyleRenderingEngineFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/HandleFactoryImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/HandleImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NVLTFActionSupport.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ViewTaskFactoryListener.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/AnnotationCanvas.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/AnnotationThumbnailCanvas.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/DingCanvas.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/NodeCanvas.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/AnnotationClipboard.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/AnnotationFactoryManager.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/AnnotationManagerImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/AnnotationTree.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AbstractAnnotation.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AnnotationSelection.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/ArrowAnnotationImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/BoundedTextAnnotationImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/DingAnnotation.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/GraphicsUtilities.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/GroupAnnotationImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/ShapeAnnotationImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/TextAnnotationImpl.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/AbstractDingAnnotationFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/ArrowAnnotationFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/BoundedTextAnnotationFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/GroupAnnotationFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/ShapeAnnotationFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/TextAnnotationFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/AbstractAnnotationDialog.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/AbstractAnnotationEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ArrowAnnotationEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/BoundedTextAnnotationEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ImageAnnotationEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/LoadImageDialog.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/TextAnnotationEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/TextFieldMouseListener.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AddAnnotationCommandTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AddAnnotationTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AddAnnotationTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/CopyAnnotationStyleTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/CopyAnnotationStyleTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/DuplicateAnnotationsTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/DuplicateAnnotationsTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/EditAnnotationTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/EditAnnotationTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/GroupAnnotationsTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/ListAnnotationsTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/ListAnnotationsTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/PasteAnnotationStyleTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/PasteAnnotationStyleTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/RemoveAnnotationCommandTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/RemoveAnnotationTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/RemoveAnnotationTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/RemoveSelectedAnnotationsTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/RemoveSelectedAnnotationsTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/ReorderAnnotationsTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/ReorderSelectedAnnotationsTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/UngroupAnnotationsTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/UngroupAnnotationsTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/UpdateAnnotationTask.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/UpdateAnnotationTaskFactory.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMainPanel.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMediator.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/ShapeIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/DiscreteValueList.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/EdgeBendCellRenderer.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/EdgeBendEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/EdgeBendPropertyEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/EdgeBendValueEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/ObjectPositionEditor.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/SimpleRootPaneContainer.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/AnimatedDashDotStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/AnimatedEqualDashStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/AnimatedLongDashStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/AnimatedStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/BackwardSlashStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/ContiguousArrowStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/DashDotStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/DotStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/EqualDashStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/ForwardSlashStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/LongDashStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/ParallelStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/PipeStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/SeparateArrowStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/SineWaveStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/SolidStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/VerticalSlashStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/WidthStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/ZeroStroke.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/ViewChangeEdit.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/ViewState.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/ColorKeyword.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/ColorUtil.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/IconUtil.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/ImageUtil.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/SVGIcon.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/ViewUtil.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/EdgeAnchors.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/AbstractArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/Arrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/ArrowheadArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/ArrowheadArrowShort.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/CrossDeltaArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/DeltaArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/DeltaArrowShort1.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/DeltaArrowShort2.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/DiamondArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/DiamondArrowShort1.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/DiamondArrowShort2.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/DiscArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/HalfBottomArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/HalfTopArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/NoArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/arrow/TeeArrow.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/AbstractNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/DiamondNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/EllipseNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/HexagonNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/LegacyCustomNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/NodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/OctagonNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/ParallelogramNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/RectangleNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/RoundedRectangleNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/TriangleNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/nodeshape/VeeNodeShape.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/EdgeDetails.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphLOD.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphRenderer.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/LabelInfo.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/LabelLineInfo.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/ArrayIntEnumerator.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/ArrayIntIterator.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntArray.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntBTree.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntEnumerator.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntHash.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntIntHash.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntIterator.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntObjHash.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntQueue.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntStack.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/IntTHash.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/LongBTree.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/LongEnumerator.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/LongHash.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/LongLongHash.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/LongObjHash.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/LongStack.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/MinIntHeap.java
M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/util/intr/MinLongHeap.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/EdgeBendTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/customgraphics/AbstractCustomGraphics2Test.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/internal/charts/BarChartTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/internal/charts/BoxChartTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/internal/charts/DummyCyColumnIdentifierFactory.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/internal/charts/LineChartTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/internal/gradients/LinearGradientTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/internal/gradients/RadialGradientTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/graph/render/immed/GraphGraphicsTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/graph/render/immed/OldGraphGraphics.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/graph/render/stateful/GraphRendererTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/graph/render/stateful/MeasuredLineCreatorTest.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/util/intr/BitSetPerformance.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/util/intr/IntBTreeConstructionTuner.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/util/intr/IntBTreePerformance.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/util/intr/IntBTreeQueryTuner.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/util/intr/IntHashPerformance.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/util/intr/MinIntHeapPerformance.java
M ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/util/intr/PrimesGenerator.java
M edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/CyActivator.java
M edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeBundlerRunner.java
M edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeBundlerTask.java
M edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeBundlerTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/AddNestedNetworkTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/AddNestedNetworkTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/AddNodeTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/AddNodeTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/ClipboardImpl.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/ClipboardManagerImpl.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CopyEdgeTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CopyNodeTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CopyTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CopyTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CutEdgeTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CutNodeTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CutTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CutTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/CyActivator.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/DeleteNestedNetworkTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/DeleteNestedNetworkTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/GoToNestedNetworkTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/GoToNestedNetworkTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/PasteEdit.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/PasteTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/PasteTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/RenameNodeEdit.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/RenameNodeTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/RenameNodeTaskFactory.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterTask.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterTaskFactory.java
M editor-impl/src/test/java/org/cytoscape/editor/internal/ClipboardImplTest.java
M equations-functions-impl/src/main/java/org/cytoscape/equations/internal/CyActivator.java
M equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/Degree.java
M equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/GetTableCell.java
M equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/InDegree.java
M equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/IsDirected.java
M equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java
M equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SourceID.java
M equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/TargetID.java
M equations-functions-impl/src/test/java/org/cytoscape/equations/internal/functions/DegreeTest.java
M equations-functions-impl/src/test/java/org/cytoscape/equations/internal/functions/InDegreeTest.java
M equations-functions-impl/src/test/java/org/cytoscape/equations/internal/functions/OutDegreeTest.java
M equations-functions-impl/src/test/java/org/cytoscape/equations/internal/functions/SourceIDTest.java
M equations-functions-impl/src/test/java/org/cytoscape/equations/internal/functions/TargetIDTest.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/BooleanList.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/CyActivator.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/DoubleList.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/EquationCompilerImpl.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/EquationParserImpl.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/LongList.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/StringList.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/Token.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/Tokeniser.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ACos.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ASin.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ATan2.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/And.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Average.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/BList.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Combin.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Concatenate.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Cos.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Cosh.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Count.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Degrees.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Error.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Exp.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/FList.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/First.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/GeoMean.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/IList.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/If.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Largest.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Last.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Left.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Len.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ListToString.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Ln.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Log.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Lower.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Max.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Median.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Mid.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Min.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Mod.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Mode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/NormDist.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Not.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Now.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Nth.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Or.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Permut.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Pi.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Product.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Radians.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Right.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Round.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/SList.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Sign.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Sin.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Sinh.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Sqrt.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/StDev.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Substitute.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Sum.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Tan.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Tanh.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Text.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Today.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Trunc.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Upper.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Value.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Var.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/interpreter/Instruction.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/interpreter/InterpreterImpl.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/BinOpNode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/BooleanConstantNode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/FConvNode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/FloatConstantNode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/FuncCallNode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/IdentNode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/SConvNode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/StringConstantNode.java
M equations-impl/src/main/java/org/cytoscape/equations/internal/parse_tree/UnaryOpNode.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/AttribParserTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/BooleanListTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/DoubleListTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/EquationUtilTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/LongListTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/StringListTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/TokeniserTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ACosTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ASinTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ATan2Test.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/AbsTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/AndTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/AverageTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/BListTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/CombinTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ConcatenateTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/CosTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/CoshTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/CountTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ErrorTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ExpTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/FListTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/FirstTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/Framework.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/GeoMeanTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/HarMeanTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/IListTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/IfTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/LargestTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/LastTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/LeftTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/LenTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ListToStringTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/LnTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/LowerTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/MaxTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/MedianTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/MidTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/MinTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ModTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ModeTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/NormDistTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/NotTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/NowTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/NthTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/OrTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/PermutTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ProductTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/RadiansTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/RightTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/RoundTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/SListTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/SignTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/SinTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/SinhTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/SqrtTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/StDevTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/SubstituteTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/SumTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/TanTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/TanhTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/TextTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/TodayTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/TruncTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/UpperTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/ValueTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/VarTest.java
M equations-impl/src/test/java/org/cytoscape/equations/internal/interpreter/InterpreterTest.java
M event-impl/impl/src/main/java/org/cytoscape/event/internal/CyActivator.java
M event-impl/impl/src/main/java/org/cytoscape/event/internal/CyEventHelperImpl.java
M event-impl/impl/src/main/java/org/cytoscape/event/internal/CyListenerAdapter.java
M event-impl/impl/src/main/java/org/cytoscape/event/internal/PayloadAccumulator.java
M event-impl/impl/src/main/java/org/cytoscape/event/internal/ServiceComparator.java
M event-impl/impl/src/test/java/org/cytoscape/event/internal/CyEventHelperTest.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/CyActivator.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/FilterApp.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/FilterMenuItemAction.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/event/FiltersChangedEvent.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/event/FiltersChangedListener.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/AdvancedSetting.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/AtomicFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/CompositeFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/CyFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/EdgeInteractionFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/FilterModelLocator.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/InteractionFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/NodeInteractionFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/NumericFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/Relation.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/StringFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/model/TopologyFilter.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/util/ApplyFilterThread.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/util/FilterUtil.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/util/SelectUtil.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/util/ServicesUtil.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/util/VisualPropertyUtil.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/util/WidestStringComboBoxModel.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/util/WidestStringComboBoxPopupMenuListener.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/util/WidestStringProvider.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/EditNameDialog.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/EditRangeDialog.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/FilterIndexingTask.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/FilterIndexingTaskFactory.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/FilterMainPanel.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/FilterSettingPanel.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/InteractionFilterPanel.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/PassFilterWidestStringComboBoxModel.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/filters/view/TopoFilterPanel.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/gui/FilterCytoPanelComponent.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/prefuse/data/query/NumberRangeModel.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/prefuse/util/TypeLib.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/prefuse/util/ui/JRangeSlider.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/prefuse/util/ui/ValuedRangeModel.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/quickfind/app/QuickFindApp.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/quickfind/util/CyAttributesUtil.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/quickfind/util/IndexType.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/quickfind/util/QuickFind.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/quickfind/util/QuickFindImpl.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/quickfind/util/QuickFindListener.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/quickfind/util/TaskMonitorBase.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/quickfind/view/QuickFindConfigDialog.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/read/filter/FilterReader.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/GenericIndex.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/GenericIndexImpl.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/Hit.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/IndexFactory.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/IndexListener.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/NumberIndex.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/NumberIndexImpl.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/TextIndex.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/TextIndexImpl.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/index/Trie.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/view/AutoCompleteDocument.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/view/ComboBoxFactory.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/view/TextBoxRenderer.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/view/TextIndexComboBox.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/slider/JRangeSliderExtended.java
M filter-impl/src/main/java/org/cytoscape/filter/internal/write/filter/FilterWriter.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/CyActivator.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterCytoPanelComponent.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterIO.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterSettingsManager.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/filters/column/ColumnChooser.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/filters/column/ColumnFilterViewFactory.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/filters/composite/CompositeTransformerPanel.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/range/JRangeSlider.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/transformers/adjacency/AdjacencyTransformerViewFactory.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/view/AbstractPanel.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/view/AbstractPanelController.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/view/DragHandler.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/view/FilterPanel.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/view/FilterPanelController.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/view/TransformerPanel.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/view/TransformerPanelController.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/work/AbstractWorker.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/work/FilterWorker.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/work/TransformerWorker.java
M filter2-impl/src/test/java/org/cytoscape/filter/internal/UiScaffold.java
M graphml-impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLFileFilter.java
M graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLParser.java
M graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLReader.java
M graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLReaderFactory.java
M graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLToken.java
M graphml-impl/src/main/java/org/cytoscape/io/internal/write/graphml/GraphMLAttributeDataTypes.java
M graphml-impl/src/main/java/org/cytoscape/io/internal/write/graphml/GraphMLWriter.java
M graphml-impl/src/test/java/org/cytoscape/data/reader/graphml/GraphMLReaderTest.java
M graphml-impl/src/test/java/org/cytoscape/data/writer/graphml/GraphMLWriterTest.java
M group-impl/src/main/java/org/cytoscape/group/internal/CyActivator.java
M group-impl/src/main/java/org/cytoscape/group/internal/CyGroupFactoryImpl.java
M group-impl/src/main/java/org/cytoscape/group/internal/CyGroupImpl.java
M group-impl/src/main/java/org/cytoscape/group/internal/CyGroupManagerImpl.java
M group-impl/src/main/java/org/cytoscape/group/internal/GroupIO.java
M group-impl/src/main/java/org/cytoscape/group/internal/GroupUtil.java
M group-impl/src/main/java/org/cytoscape/group/internal/LockedVisualPropertiesManager.java
M group-impl/src/main/java/org/cytoscape/group/internal/ModelUtils.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupAggregationManagerImpl.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupAggregationSettings.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupNodeSettingsTaskFactory.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupSettingsImpl.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupSettingsTask.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupSettingsTaskFactory.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupViewSettings.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/GroupDataCollapseHandler.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/GroupViewTypeChangedEvent.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/GroupViewTypeChangedListener.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/AbstractAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/BooleanAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/DoubleAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/DoubleListAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/IntegerAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/IntegerListAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/ListAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/LongAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/LongListAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/NoneAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/StringAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/data/aggregators/StringListAggregator.java
M group-impl/src/main/java/org/cytoscape/group/internal/view/GroupViewCollapseHandler.java
M group-impl/src/main/java/org/cytoscape/group/internal/view/GroupViewDoubleClickListener.java
M group-impl/src/main/java/org/cytoscape/group/internal/view/NodeChangeListener.java
M group-impl/src/main/java/org/cytoscape/group/internal/view/ViewUtils.java
M group-impl/src/test/java/org/cytoscape/group/CyGroupTest.java
M group-impl/src/test/java/org/cytoscape/group/GroupTestSupport.java
M group-impl/src/test/java/org/cytoscape/group/TestCyGroupFactory.java
M gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/CyActivator.java
M gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/Parser.java
M gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/StartupConfig.java
M headless-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M headless-application-impl/src/main/java/org/cytoscape/internal/NetworkAddedSetCurrent.java
M headless-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/headless/internal/CyActivator.java
M headless-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/headless/internal/Parser.java
M headless-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/headless/internal/StartupConfig.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractNetworkReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractPropertyReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractTableReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractTableReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractVizmapReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/CopyInputStream.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/CyNetworkReaderManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/CyPropertyReaderManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/CySessionReaderManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/CyTableReaderManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/MarkSupportedInputStream.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/VizmapReaderManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/ZipInputStreamWrapper.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/cysession/CysessionFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/cysession/CysessionReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/cysession/CysessionReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/datatable/CSVCyReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/datatable/CSVCyReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/datatable/ColumnInfo.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/datatable/CyAttributesReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/datatable/CyAttributesReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/datatable/CyTablesXMLReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/datatable/SessionTableFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/datatable/TableInfo.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/expression/ExpressionReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/expression/ExpressionReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/expression/mRNAMeasurement.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/KeyValue.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFParser.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/properties/PropertiesFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/properties/PropertiesReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/properties/PropertiesReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/AbstractSessionReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/Cy2SessionReaderFactoryImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/Cy2SessionReaderImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/Cy3SessionReaderFactoryImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/Cy3SessionReaderImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/CyTableMetadataImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/SessionFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/Interaction.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/vizmap/VizmapPropertiesFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/vizmap/VizmapPropertiesReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/vizmap/VizmapPropertiesReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/vizmap/VizmapXMLFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/vizmap/VizmapXMLReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/vizmap/VizmapXMLReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/Handler.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/HandlerFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataEntries.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataParser.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectTypeMap.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/ParseState.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/RDFTags.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SAXState.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkViewFileFilter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkViewReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkViewReaderFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLParser.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AbstractHandler.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AttributeValueUtil.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdge.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraph.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraphAttribute.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraphGraphics.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttribute.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttributeDone.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNode.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraph.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphDone.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDF.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleViewEdge.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleViewEdgeGraphics.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleViewGraph.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleViewGraphGraphics.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleViewLockedVisualPropAttribute.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleViewNode.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleViewNodeGraphics.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/XGMMLParseUtil.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/ui/ExportBitmapOptionsPanel.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/GroupUtil.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/ReadCache.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/ReadUtils.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/RecentlyOpenedTrackerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/SUIDUpdater.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/StreamUtilImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/UnrecognizedVisualPropertyManager.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/session/SessionUtil.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/vizmap/CalculatorConverter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/vizmap/CalculatorConverterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/vizmap/VisualStyleSerializer.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/xgmml/ObjectType.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/AbstractCyWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/AbstractWriterManager.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/CyNetworkViewWriterManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/CyTableWriterManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/PropertyWriterManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/SessionWriterManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/VizmapWriterManagerImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/bookmarks/BookmarksWriterFactoryImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/bookmarks/BookmarksWriterImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/cysession/CysessionWriterFactoryImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/cysession/CysessionWriterImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/datatable/CyTablesXMLWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/datatable/csv/CSVCyWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/datatable/csv/CSVTableWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PDFWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PDFWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PNGWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PSWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PSWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/SVGWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/SVGWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/nnf/NnfNetworkWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/nnf/NnfWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/properties/PropertiesWriterFactoryImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/properties/PropertiesWriterImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/session/SessionWriterFactoryImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/session/SessionWriterImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/sif/SifNetworkWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/sif/SifWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/vizmap/VizmapWriterFactoryImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/vizmap/VizmapWriterImpl.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/GenericXGMMLWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/GenericXGMMLWriterFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/GenericXGMMLWriterNoViewFactory.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/SessionXGMMLNetworkViewWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/SessionXGMMLNetworkWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/SessionXGMMLWriterFactory.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/AbstractNetworkReaderTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/datatable/CSVCyReaderTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/gml/GMLFileFilterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/gml/GMLNetworkReaderTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/nnf/NNFReaderTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/session/Cy3SessionReaderImplTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/session/SessionFileFilterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/sif/InteractionTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReaderTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/util/SUIDUpdaterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/util/UnrecognizedVisualPropertyManagerTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/util/vizmap/CalculatorConverterFactoryTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/util/vizmap/CalculatorConverterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/util/vizmap/VisualStyleSerializerTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/write/graphics/BitmapWriterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/write/graphics/PDFWriterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/write/xgmml/AbstractXGMMLWriterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/write/xgmml/GenericXGMMLWriterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/write/xgmml/SessionXGMMLNetworkViewWriterTest.java
M io-impl/impl/src/test/java/org/cytoscape/io/internal/write/xgmml/SessionXGMMLNetworkWriterTest.java
M io-impl/performance/src/main/java/org/cytoscape/io/read/sif/PerfTest.java
M jobs-impl/src/main/java/org/cytoscape/jobs/internal/CyActivator.java
M jobs-impl/src/main/java/org/cytoscape/jobs/internal/CyJobManagerImpl.java
M jobs-impl/src/main/java/org/cytoscape/jobs/internal/GUICyJobMonitor.java
M jobs-impl/src/main/java/org/cytoscape/jobs/internal/GUIJobDialog.java
M jobs-impl/src/main/java/org/cytoscape/jobs/internal/SimpleCyJobMonitor.java
M layout-cytoscape-impl/src/main/java/csapps/layout/CyActivator.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/GroupAttributesLayout.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/GroupAttributesLayoutContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/GroupAttributesLayoutTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/StackedNodeLayout.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/StackedNodeLayoutContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/StackedNodeLayoutTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/bioLayout/BioLayoutAlgorithm.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/bioLayout/BioLayoutContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/bioLayout/BioLayoutFRContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/bioLayout/BioLayoutKKContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/circularLayout/CircularLayoutAlgorithm.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/circularLayout/CircularLayoutAlgorithmTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/circularLayout/CircularLayoutContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/cose/CoSELayoutAlgorithm.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/cose/CoSELayoutAlgorithmTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/cose/CoSELayoutContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/AttributeCircleLayoutContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/AttributeCircleLayoutTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/AttributeGridLayoutContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/AttributeGridLayoutTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/DegreeSortedCircleContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/DegreeSortedCircleLayoutTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/ISOMLayout.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/ISOMLayoutContext.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/ISOMLayoutTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/graphPartition/Layout.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithmTask.java
M layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/hierarchicalLayout/HierarchicalLayoutContext.java
M layout-impl/src/main/java/org/cytoscape/view/layout/internal/CyActivator.java
M layout-impl/src/main/java/org/cytoscape/view/layout/internal/CyLayoutAlgorithmManagerImpl.java
M layout-impl/src/main/java/org/cytoscape/view/layout/internal/algorithms/GridNodeLayout.java
M layout-impl/src/main/java/org/cytoscape/view/layout/internal/algorithms/GridNodeLayoutContext.java
M layout-impl/src/main/java/org/cytoscape/view/layout/internal/algorithms/GridNodeLayoutTask.java
M layout-impl/src/main/java/org/cytoscape/view/layout/internal/task/LayoutTaskFactoryWrapper.java
M layout-impl/src/main/java/org/cytoscape/view/layout/internal/task/LayoutWrapperTask.java
M layout-impl/src/test/java/org/cytoscape/view/layout/AbstractLayoutAlgorithmTest.java
M layout-impl/src/test/java/org/cytoscape/view/layout/AbstractLayoutTaskTest.java
M layout-impl/src/test/java/org/cytoscape/view/layout/AbstractPartitionLayoutTaskTest.java
M layout-impl/src/test/java/org/cytoscape/view/layout/LayoutAlgorithmTest.java
M layout-impl/src/test/java/org/cytoscape/view/layout/LayoutEdgeTest.java
M layout-impl/src/test/java/org/cytoscape/view/layout/LayoutNodeTest.java
M layout-impl/src/test/java/org/cytoscape/view/layout/LayoutPartitionTest.java
M layout-impl/src/test/java/org/cytoscape/view/layout/LayoutTaskTest.java
M layout-jgraph-impl/src/main/java/csapps/layout/CyActivator.java
M layout-jgraph-impl/src/main/java/csapps/layout/JGraphLayoutWrapper.java
M layout-jgraph-impl/src/main/java/csapps/layout/JGraphLayoutWrapperTask.java
M layout-prefuse-impl/src/main/java/org/cytoscape/prefuse/layouts/internal/CyActivator.java
M layout-prefuse-impl/src/main/java/org/cytoscape/prefuse/layouts/internal/ForceDirectedLayout.java
M layout-prefuse-impl/src/main/java/org/cytoscape/prefuse/layouts/internal/ForceDirectedLayoutContext.java
M layout-prefuse-impl/src/main/java/org/cytoscape/prefuse/layouts/internal/ForceDirectedLayoutTask.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/AbstractForce.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/BackwardEulerIntegrator.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/CircularWallForce.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/DragForce.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/EulerIntegrator.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/Force.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/ForceItem.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/ForceSimulator.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/GravitationalForce.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/Integrator.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/NBodyForce.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/RungeKuttaIntegrator.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/Spring.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/SpringForce.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/StateMonitor.java
M layout-prefuse-impl/src/main/java/prefuse/util/force/WallForce.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/CyActivator.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/DynamicEdgeLinkoutMenuFactory.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/DynamicNodeLinkoutMenuFactory.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/DynamicSupport.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/EdgeLinkoutTaskFactory.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/LinkOut.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/LinkoutTask.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/NodeLinkoutTaskFactory.java
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/PropsReader.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/AllLogMessagesProcesser.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/AppenderToQueue.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/ConsoleDialog.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/CyActivator.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/CyStatusBar.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/LogViewer.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/LowPriorityDaemonThreadFactory.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/QueueProcesser.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/UserMessagesDialog.java
M log-swing-impl/src/main/java/org/cytoscape/log/internal/UserMessagesProcesser.java
M log-swing-impl/src/test/java/org/cytoscape/log/internal/LogViewerTest.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/CyActivator.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/common/AbstractManualLayoutAction.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/common/CheckBoxTracker.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/common/GraphConverter2.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/common/PolymorphicSlider.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/common/SliderStateTracker.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/AbstractControlAction.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/ControlPanelAction.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/align/HAlignCenter.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/align/HAlignLeft.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/align/HAlignRight.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/align/VAlignBottom.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/align/VAlignCenter.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/align/VAlignTop.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/dist/HDistCenter.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/dist/HDistLeft.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/dist/HDistRight.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/dist/VDistBottom.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/dist/VDistCenter.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/dist/VDistTop.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/stack/HStackBottom.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/stack/HStackCenter.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/stack/HStackTop.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/stack/VStackCenter.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/stack/VStackLeft.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/actions/stack/VStackRight.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/AlignPanel.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/DistPanel.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/LayoutToolsPanel.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/StackPanel.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/rotate/RotatePanel.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/rotate/RotationLayouter.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/scale/ScaleLayouter.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/scale/ScalePanel.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/util/IconUtil.java
M manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/util/Util.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/AbstractTableFacade.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/AttribTopoGraphNode.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/ColumnSetListener.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyActivator.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyColumnImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyEdgeImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyListImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNetworkFactoryImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNetworkManagerImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNetworkTableManagerImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNodeImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyRootNetworkImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyRootNetworkManagerImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CySubNetworkImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyTableEntryImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyTableFactoryImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyTableImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyTableManagerImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/CyTableMetadataImpl.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/DefaultTablesNetwork.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/EdgePointer.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/EqnSupport.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/InteractionSetListener.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/LocalTableFacade.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/NameSetListener.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/NetworkNameSetListener.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/NodePointer.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/NonVirtualColumnInfo.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/SharedTableFacade.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/SimpleNetwork.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/TableEventHelperFacade.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/VirtualColumn.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/VirtualColumnAdder.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/WeakMapList.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/tsort/TopoGraphNode.java
M model-impl/impl/src/main/java/org/cytoscape/model/internal/tsort/TopologicalSort.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyColumnTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyEdgeTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyIdentifiableTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyNetworkTableManagerTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyNetworkTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyNodeTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyTableManagerTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyTableTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/CyTableUtilTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/EquationTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/GraphObjectTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/NetworkTestSupport.java
M model-impl/impl/src/test/java/org/cytoscape/model/NetworkTestSupportTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/TableTestSupport.java
M model-impl/impl/src/test/java/org/cytoscape/model/TableTestSupportTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/TestCyNetworkFactory.java
M model-impl/impl/src/test/java/org/cytoscape/model/internal/tsort/TopologicalSortTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/subnetwork/CyRootNetworkCyNetworkTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/subnetwork/CyRootNetworkTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/subnetwork/CySubNetworkCyNetworkTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/subnetwork/CySubNetworkCyTableManagerTest.java
M model-impl/impl/src/test/java/org/cytoscape/model/subnetwork/CySubNetworkTest.java
M model-impl/performance-debug/src/main/java/org/cytoscape/model/PerfTest.java
M model-impl/table-performance-debug/src/main/java/org/cytoscape/model/PerfTest.java
M presentation-impl/src/main/java/org/cytoscape/view/presentation/internal/CyActivator.java
M presentation-impl/src/main/java/org/cytoscape/view/presentation/internal/RenderingEngineManagerImpl.java
M presentation-impl/src/main/java/org/cytoscape/view/presentation/internal/property/values/CyColumnIdentifierFactoryImpl.java
M presentation-impl/src/main/java/org/cytoscape/view/presentation/internal/property/values/CyColumnIdentifierImpl.java
M presentation-impl/src/test/java/org/cytoscape/view/presentation/RenderingEngineManagerTest.java
M property-impl/src/main/java/org/cytoscape/property/internal/CyActivator.java
M property-impl/src/main/java/org/cytoscape/property/internal/PropsReader.java
M property-impl/src/main/java/org/cytoscape/property/internal/bookmark/BookmarkReader.java
M property-impl/src/main/java/org/cytoscape/property/internal/bookmark/BookmarksUtilImpl.java
M scripting-impl/src/main/java/org/cytoscape/scripting/internal/AbstractExecuteScriptTask.java
M scripting-impl/src/main/java/org/cytoscape/scripting/internal/CyActivator.java
M scripting-impl/src/main/java/org/cytoscape/scripting/internal/ExecuteScriptCommandTask.java
M scripting-impl/src/main/java/org/cytoscape/scripting/internal/ExecuteScriptTask.java
M scripting-impl/src/main/java/org/cytoscape/scripting/internal/ExecuteScriptTaskFactory.java
M scripting-impl/src/main/java/org/cytoscape/scripting/internal/command/CommandCompleter.java
M scripting-impl/src/main/java/org/cytoscape/scripting/internal/command/ExecuteScriptCommand.java
M scripting-impl/src/test/java/org/cytoscape/scripting/internal/ExecuteScriptTaskTest.java
M search-impl/src/main/java/org/cytoscape/search/internal/CyActivator.java
M search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearch.java
M search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchIndex.java
M search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchIndexFactory.java
M search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchManager.java
M search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchPlugin.java
M search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchQuery.java
M search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchQueryFactory.java
M search-impl/src/main/java/org/cytoscape/search/internal/IndexAndSearchTask.java
M search-impl/src/main/java/org/cytoscape/search/internal/NodeAndEdgeSelector.java
M search-impl/src/main/java/org/cytoscape/search/internal/NodeAndEdgeSelectorImpl.java
M search-impl/src/main/java/org/cytoscape/search/internal/ReindexTask.java
M search-impl/src/main/java/org/cytoscape/search/internal/SearchTaskFactory.java
M search-impl/src/main/java/org/cytoscape/search/internal/ViewUpdator.java
M search-impl/src/main/java/org/cytoscape/search/internal/ViewUpdatorImpl.java
M search-impl/src/main/java/org/cytoscape/search/internal/ui/EnhancedSearchPanel.java
M search-impl/src/main/java/org/cytoscape/search/internal/util/AttributeFields.java
M search-impl/src/main/java/org/cytoscape/search/internal/util/CustomMultiFieldQueryParser.java
M search-impl/src/main/java/org/cytoscape/search/internal/util/EnhancedSearchUtils.java
M search-impl/src/test/java/org/cytoscape/search/internal/IndexAndSearchTaskTest.java
M search-impl/src/test/java/org/cytoscape/search/internal/NodeAndEdgeSelectorImplTest.java
M search-impl/src/test/java/org/cytoscape/search/internal/SearchResultsTest.java
M search-impl/src/test/java/org/cytoscape/search/internal/ViewUpdatorImplTest.java
M search-impl/src/test/java/org/cytoscape/search/internal/util/AttributeFieldsTest.java
M search-impl/src/test/java/org/cytoscape/search/internal/util/EnhancedSearchUtilsTest.java
M session-impl/src/main/java/org/cytoscape/session/internal/CyActivator.java
M session-impl/src/main/java/org/cytoscape/session/internal/CyNetworkNamingImpl.java
M session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java
M session-impl/src/main/java/org/cytoscape/session/internal/CyTableMetadataImpl.java
M swing-application-impl/src/main/java/org/cytoscape/internal/MacCyActivator.java
M swing-application-impl/src/main/java/org/cytoscape/internal/QuickStartStartup.java
M swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/AboutAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/BookmarkAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/CheckForUpdatesAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/CommandListAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/CommandListUI.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/CreateNetworkViewsAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/CytoPanelAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/DestroyNetworkViewsAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/DestroyNetworksAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/DetachedViewToolBarAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/ExitAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/ExportImageAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/ExportNetworkAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/FullScreenAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/FullScreenMacAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/PreferenceAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/PrintAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/RecentSessionManager.java
M swing-application-impl/src/main/java/org/cytoscape/internal/actions/StarterPanelAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/BookmarkDialog.java
M swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/BookmarkDialogFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/PreferenceTableModel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/PreferenceValueDialog.java
M swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/PreferencesDialog.java
M swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/PreferencesDialogFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/io/SessionIO.java
M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/DynamicLayoutMenu.java
M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutMenuPopulator.java
M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java
M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsManager.java
M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/NetworkViewMenuListener.java
M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/SettingsAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/StaticLayoutMenu.java
M swing-application-impl/src/main/java/org/cytoscape/internal/model/RootNetworkManager.java
M swing-application-impl/src/main/java/org/cytoscape/internal/model/SelectionMode.java
M swing-application-impl/src/main/java/org/cytoscape/internal/select/AbstractViewUpdater.java
M swing-application-impl/src/main/java/org/cytoscape/internal/select/RowViewTracker.java
M swing-application-impl/src/main/java/org/cytoscape/internal/select/RowsSetViewUpdater.java
M swing-application-impl/src/main/java/org/cytoscape/internal/select/SelectEdgeViewUpdater.java
M swing-application-impl/src/main/java/org/cytoscape/internal/select/SelectNodeViewUpdater.java
M swing-application-impl/src/main/java/org/cytoscape/internal/shutdown/ConfigDirPropertyWriter.java
M swing-application-impl/src/main/java/org/cytoscape/internal/task/GetLatestVersionTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/task/LoadFileListTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/tunable/CyPropertyConfirmation.java
M swing-application-impl/src/main/java/org/cytoscape/internal/tunable/CyPropertyConfirmationHandler.java
M swing-application-impl/src/main/java/org/cytoscape/internal/undo/RedoAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/undo/UndoAction.java
M swing-application-impl/src/main/java/org/cytoscape/internal/util/HSLColor.java
M swing-application-impl/src/main/java/org/cytoscape/internal/util/IconUtil.java
M swing-application-impl/src/main/java/org/cytoscape/internal/util/SimpleToolBarToggleButton.java
M swing-application-impl/src/main/java/org/cytoscape/internal/util/Util.java
M swing-application-impl/src/main/java/org/cytoscape/internal/util/undo/UndoMonitor.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanelModel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/BiModalJSplitPane.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/BirdsEyeViewPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/CyDesktopManager.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/CyHelpBrokerImpl.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelNameInternal.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelStateInternal.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelUtil.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuBar.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/ExpandCollapseButton.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/GridViewToggleModel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/GridViewTogglePanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/MacFullScreenEnabler.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/MemStatusPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchMediator.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSelectionMediator.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewComparisonPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewContainer.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewFrame.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMediator.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewPreviewDialog.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/NullNetworkViewPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanelModel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/SimpleRootPaneContainer.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanelModel.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/AboutDialog.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/ArrangeTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/ArrangeTaskFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpContactHelpDeskTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpReportABugTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpReportABugTaskFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpTourTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpTourTaskFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpTutorialsTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpTutorialsTaskFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpUserManualTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpUserManualTaskFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpVideosTask.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpVideosTaskFactory.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/updater/UpdatesDialog.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/util/VerticalButtonUI.java
M swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java
M swing-application-impl/src/test/java/org/cytoscape/internal/view/util/ViewUtilTest.java
M swing-util-impl/src/main/java/org/cytoscape/util/swing/internal/CyActivator.java
M swing-util-impl/src/main/java/org/cytoscape/util/swing/internal/CyColorPaletteChooserFactoryImpl.java
M swing-util-impl/src/main/java/org/cytoscape/util/swing/internal/CyColorPaletteChooserImpl.java
M swing-util-impl/src/main/java/org/cytoscape/util/swing/internal/FileUtilImpl.java
M swing-util-impl/src/main/java/org/cytoscape/util/swing/internal/OpenBrowserImpl.java
M swing-util-impl/src/test/java/org/cytoscape/util/swing/internal/CyActivatorTest.java
M swing-util-impl/src/test/java/org/cytoscape/util/swing/internal/FileUtilImplTest.java
M swing-util-impl/src/test/java/org/cytoscape/util/swing/internal/OpenBrowserImplTest.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/format/SetColumnFormatDialog.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/io/TableColumnStat.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/io/TableColumnStatFileIO.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ClearAllErrorsTask.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ClearAllErrorsTaskFactory.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/SetColumnFormatTaskFactory.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/util/IconUtil.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/util/TableBrowserUtil.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/OpenURLMenu.java
M table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/TableChooserCellRenderer.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/io/WildCardCyFileFilter.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/AbstractGraphReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/AbstractLineParser.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/AbstractMappingParameters.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/AttributeLineParser.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/AttributeMappingParameters.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/DefaultAttributeTableReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/ExcelAttributeSheetReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/ExcelNetworkSheetReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/GraphReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/MappingParameter.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/NetworkLineParser.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/NetworkTableMappingParameters.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/NetworkTableReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/SupportedFileType.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/TextDelimiter.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/TextTableReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/ontology/GeneAssociationReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/ontology/GeneAssociationTag.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/ontology/OBONetworkReaderFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/ontology/OBOReader.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/reader/ontology/OBOTags.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/AbstractLoadTableTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/AbstractTableReaderFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/AddImportedTableTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/CombineNetworkReaderAndMappingTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/CombineTableReaderAndMappingTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/FinalStatusMessageUpdateTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportAttributeTableReaderFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportAttributeTableReaderTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportNetworkTableReaderFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportNetworkTableReaderTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportNoGuiNetworkReaderFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportNoGuiTableReaderFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportOntologyAndAnnotationAction.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportOntologyAndAnnotationTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportOntologyAndAnnotationTaskFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportTableDataTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ImportTableDataTaskFactoryImpl.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/LoadNetworkReaderTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/LoadTableFileTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/LoadTableFileTaskFactoryImpl.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/LoadTableReaderTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/LoadTableURLTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/LoadTableURLTaskFactoryImpl.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/MapGeneAssociationTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/NetworkCollectionHelper.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/ReaderTableTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/RegisterOntologyTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/SelectFileTableTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/SelectURLTableTask.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/TableImportContext.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/tunable/AttributeMappingParametersHandler.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/tunable/AttributeMappingParametersHandlerFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/tunable/NetworkTableMappingParametersHandler.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/tunable/NetworkTableMappingParametersHandlerFactory.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/DataSourceSelectDialog.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/ImportTablePanel.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/OntologyPanelBuilder.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/PreviewTablePanel.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/theme/ImportDialogIcons.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/AttributeDataType.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/DataUtils.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/FileType.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/IconUtil.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/ImportType.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/OntologyDAGManager.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/OntologyUtil.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/ProxyHandler.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/SourceColumnSemantic.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/TypeUtil.java
M table-import-impl/src/main/java/org/cytoscape/tableimport/internal/util/URLUtil.java
M table-import-impl/src/test/java/org/cytoscape/tableimport/internal/reader/ontology/GeneAssociationReaderTest.java
M table-import-impl/src/test/java/org/cytoscape/tableimport/internal/reader/ontology/OBOReaderTest.java
M table-import-impl/src/test/java/org/cytoscape/tableimport/internal/task/LoadAttributesFileTaskFactoryImplTest.java
M table-import-impl/src/test/java/org/cytoscape/tableimport/internal/task/LoadAttributesURLTaskFactoryImplTest.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTable.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTableCellRenderer.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTableModel.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/MultiLineTableCellEditor.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/icon/ColorIcon.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/icon/FontFaceIcon.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/icon/TextIcon.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/icon/VisualPropertyIcon.java
M table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/util/TableBrowserUtil.java
M util-impl/src/main/java/org/cytoscape/util/internal/CyActivator.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/AbstractDivergingPalette.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/AbstractPalette.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/BuiltinDivergentPaletteProvider.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/ColorBrewerPaletteProvider.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/PaletteProviderManagerImpl.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/RainbowOSCPaletteProvider.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/RainbowPaletteProvider.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/RandomPaletteProvider.java
M util-impl/src/main/java/org/cytoscape/util/internal/color/ViridisPaletteProvider.java
M viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyActivator.java
M viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/network/CyNetworkViewManagerImpl.java
M viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/network/CyNetworkViewManagerTest.java
M vizmap-gui-core-impl/src/main/java/org/cytoscape/view/vizmap/gui/core/internal/CyActivator.java
M vizmap-gui-core-impl/src/main/java/org/cytoscape/view/vizmap/gui/core/internal/cellrenderer/ContinuousMappingCellRenderer.java
M vizmap-gui-core-impl/src/main/java/org/cytoscape/view/vizmap/gui/core/internal/cellrenderer/ContinuousMappingCellRendererFactoryImpl.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/CyActivator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/MappingFunctionFactoryManagerImpl.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/VizMapperProperty.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/AbstractVizMapperAction.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/ApplyVisualStyleAction.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/EditSelectedDiscreteValuesAction.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/GenerateDiscreteValuesAction.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/ModifyBrightnessAction.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/RemoveSelectedDiscreteValuesAction.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/ImportDefaultVisualStylesCommand.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/StartupCommand.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/event/CellType.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/event/VizMapEventHandlerManagerImpl.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/AttributeSet.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/AttributeSetProxy.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ClearAllBendsForThisEdgeTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ClearAllBendsForThisEdgeTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CreateLegendTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CreateLegendTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CreateNewVisualStyleTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CreateNewVisualStyleTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ImportDefaultVizmapTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/MakeVisualStylesDefaultTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/MakeVisualStylesDefaultTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RefreshStyleTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualStylesTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualStylesTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RenameVisualStyleTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RenameVisualStyleTaskFactory.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NotificationNames.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NumberConverter.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/ServicesUtil.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/mapgenerator/AbstractDiscreteMappingGenerator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/mapgenerator/FitLabelMappingGenerator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/mapgenerator/NumberSeriesMappingGenerator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/mapgenerator/PaletteMappingWrapper.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/mapgenerator/RainbowColorMappingGenerator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/mapgenerator/RainbowOscColorMappingGenerator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/mapgenerator/RandomColorMappingGenerator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/mapgenerator/RandomNumberMappingGenerator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/AbstractVizMapperModel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/DropDownMenuButton.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualStyleSelector.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapPropertyBuilder.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMenuMediator.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/CyColorCellRenderer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/FontCellRenderer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/NumberContinuousCellRenderer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/BasicVisualPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/BooleanVisualPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/ColorVisualPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/DiscreteValueVisualPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/EditorManagerImpl.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/FontVisualPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/NumberVisualPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/StringVisualPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/AbstractContinuousMappingEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/BelowAndAbovePanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2CEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2CMappingEditorPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2DEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2DMappingEditorPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/ContinuousMappingEditorPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/ContinuousTrackRenderer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/CyGradientTrackRenderer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/DiscreteTrackRenderer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/EditorValueRangeTracer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/GradientEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/GradientEditorPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/MinMaxDialog.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/VizMapTrackRenderer.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/YValueLegendPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/propertyeditor/AttributeComboBoxPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/propertyeditor/CyColorPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/propertyeditor/CyDiscreteValuePropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/propertyeditor/CyFontPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/propertyeditor/CyNumberPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/propertyeditor/CyStringPropertyEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/AbstractValueEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/BooleanValueEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/CyColorChooser.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/DiscreteValueEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/FontValueEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/NumericValueEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/StringValueEditor.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/legend/AbstractMappingLegendPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/legend/ContinuousLegendPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/legend/DiscreteLegendPanel.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/legend/ExportLegendTask.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/legend/LegendDialog.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/legend/LegendTable.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/util/SimpleToolBarToggleButton.java
M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/util/ViewUtil.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/AbstractApplyHandler.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/AbstractVisualMappingManager.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/ApplyHandler.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/ApplyToEdgeHandler.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/ApplyToNetworkHandler.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/ApplyToNodeHandler.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/CyActivator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/NetworkVisualMappingManagerImpl.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/VisualStyleFactoryImpl.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/VisualStyleImpl.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/ColorTranslator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/ContinuousMappingFactory.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/ContinuousMappingImpl.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/DiscreteMappingFactory.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/DiscreteMappingImpl.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/NumberTranslator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/PassthroughMappingFactory.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/PassthroughMappingImpl.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/StringTranslator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/interpolators/FlatInterpolator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/interpolators/Interpolator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/interpolators/LinearNumberInterpolator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/interpolators/LinearNumberToColorInterpolator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/interpolators/LinearNumberToNumberInterpolator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/interpolators/NumberInterpolator.java
M vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/util/ColorUtil.java
M vizmap-impl/impl/src/test/java/org/cytoscape/view/vizmap/internal/VisualMappingManagerTest.java
M vizmap-impl/impl/src/test/java/org/cytoscape/view/vizmap/internal/VisualStyleFactoryTest.java
M vizmap-impl/impl/src/test/java/org/cytoscape/view/vizmap/internal/VisualStyleTest.java
M vizmap-impl/impl/src/test/java/org/cytoscape/view/vizmap/internal/mappings/ContinuousMappingTest.java
M vizmap-impl/impl/src/test/java/org/cytoscape/view/vizmap/internal/mappings/DiscreteMappingTest.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/CyActivator.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/task/ShowImportDialogAction.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/task/WebServiceContextMenuTask.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/task/WebServiceEdgeContextMenuTaskFactory.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/task/WebServiceNodeContextMenuTaskFactory.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/ui/AboutDialog.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/ui/WebServiceContextMenu.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/ui/WebServiceContextMenuManager.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/ui/WebServiceGUIImpl.java
M webservice-impl/src/main/java/org/cytoscape/webservice/internal/ui/WebServiceImportDialog.java
M work-headless-impl/src/main/java/org/cytoscape/work/internal/CyActivator.java
M work-headless-impl/src/main/java/org/cytoscape/work/internal/task/HDialogTaskManager.java
M work-headless-impl/src/main/java/org/cytoscape/work/internal/task/UndoSupportImpl.java
M work-impl/src/main/java/org/cytoscape/work/internal/CyActivator.java
M work-impl/src/main/java/org/cytoscape/work/internal/properties/BasicTypePropertyHandler.java
M work-impl/src/main/java/org/cytoscape/work/internal/properties/BoundedPropertyHandler.java
M work-impl/src/main/java/org/cytoscape/work/internal/properties/ListMultiplePropertyHandler.java
M work-impl/src/main/java/org/cytoscape/work/internal/properties/ListSinglePropertyHandler.java
M work-impl/src/main/java/org/cytoscape/work/internal/properties/ParameterizedTypePropertyHandler.java
M work-impl/src/main/java/org/cytoscape/work/internal/properties/SimpleTunablePropertyHandlerFactory.java
M work-impl/src/main/java/org/cytoscape/work/internal/properties/TunablePropertySerializerFactoryImpl.java
M work-impl/src/main/java/org/cytoscape/work/internal/properties/TunablePropertySerializerImpl.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/DelegateTask.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/DelegatingTaskMonitor.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/LoggingTaskMonitor.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/SyncTaskManager.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/SyncTunableHandler.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/SyncTunableHandlerFactory.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/SyncTunableMutator.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/SyncTunableMutatorFactory.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/TunableRecorderManager.java
M work-impl/src/main/java/org/cytoscape/work/internal/sync/TunableSetterImpl.java
M work-impl/src/test/java/org/cytoscape/work/internal/properties/Line.java
M work-impl/src/test/java/org/cytoscape/work/internal/properties/LotsOfTunables.java
M work-impl/src/test/java/org/cytoscape/work/internal/properties/Point.java
M work-impl/src/test/java/org/cytoscape/work/internal/properties/TunablePropertySerializerTest.java
M work-impl/src/test/java/org/cytoscape/work/internal/properties/YesNoMaybe.java
M work-impl/src/test/java/org/cytoscape/work/internal/sync/DelegatingTaskMonitorTest.java
M work-impl/src/test/java/org/cytoscape/work/internal/sync/SyncTaskManagerTest.java
M work-impl/src/test/java/org/cytoscape/work/internal/sync/SyncTunableHandlerTest.java
M work-impl/src/test/java/org/cytoscape/work/internal/sync/SyncTunableMutatorTest.java
M work-impl/src/test/java/org/cytoscape/work/internal/sync/TunableHolder.java
M work-impl/src/test/java/org/cytoscape/work/internal/sync/TunableSetterTest.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/CyActivator.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/UndoSupportImpl.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/CyUserLogAppender.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/JDialogTaskManager.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/JPanelTaskManager.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/SwingTaskMonitor.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskHistory.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/AbstractNumberHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/BooleanHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/BoundedHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/DoubleHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/FileHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/FileHandlerFactory.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/FloatHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/IntegerHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JComboBoxDecorator.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JDialogTunableMutator.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JPanelTunableMutator.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/ListMultipleHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/ListSingleHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/LongHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/StringHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/URLHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/URLHandlerFactory.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/UserActionHandler.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/CheckListCellRenderer.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/CheckListManager.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/ColorUtil.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/CyCardLayout.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/GUIDefaults.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/SimplePanel.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/StringUtil.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/SupportedFileTypesManager.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/TunableBoundedField.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/TunableDialog.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/TunableSlider.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/ViewUtil.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/XorPanel.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/RoundedProgressBar.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskDialog.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskHistoryWindow.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskMediator.java
M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskStatusBar.java

Log Message:
-----------
Merge branch 'develop' into feature/label_selection

Conflicts:
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DNodeDetails.java


Compare: https://github.com/cytoscape/cytoscape-impl/compare/f6e049279f06...30f611409340