[cytoscape/cytoscape.js] ee4c82: Add FCOSE gnee-gene demo to replace Cola gene-gene...

[Max Franz]

Branch: refs/heads/docs/fcose-demo-and-misc
Home: https://github.com/cytoscape/cytoscape.js
Commit: ee4c829fbf3de74aa64c7d5d47bf1fd974cfba1b
https://github.com/cytoscape/cytoscape.js/commit/ee4c829fbf3de74aa64c7d5d47bf1fd974cfba1b
Author: Max Franz <maxk...@gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)

Changed paths:
A documentation/demos/fcose-gene/code.js
A documentation/demos/fcose-gene/cy-style.json
A documentation/demos/fcose-gene/data.json
A documentation/demos/fcose-gene/index.html
A documentation/demos/fcose-gene/style.css
M documentation/docmaker.json
A documentation/img/demos/fcose-gene.png

Log Message:
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Add FCOSE gnee-gene demo to replace Cola gene-gene demo

- While Cola is a good layout, FCOSE is faster and provides better compound support. It's our default recommendation in the blog (https://blog.js.cytoscape.org/2020/05/11/layouts/).
- The Cola demo used to be the first one at the top of the demos. It gives the impression that it's our top/default pick.
- People end up complaining, "Why can't I do X with Cola?" If they were to use FCOSE first, they'd get a better result most of the time.


Commit: 62f5ad2b9c89e322dbbb97094eb5360291e8645f
https://github.com/cytoscape/cytoscape.js/commit/62f5ad2b9c89e322dbbb97094eb5360291e8645f
Author: Max Franz <maxk...@gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)

Changed paths:
M documentation/md/extensions.md
M documentation/md/intro.md

Log Message:
-----------
Miscellaneous fixes in the documentation


Compare: https://github.com/cytoscape/cytoscape.js/compare/ee4c829fbf3d%5E...62f5ad2b9c89

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[Max Franz]

Branch: refs/heads/unstable

Commit: 813ae565542a5cf5946614a6e3c40891187483d9
https://github.com/cytoscape/cytoscape.js/commit/813ae565542a5cf5946614a6e3c40891187483d9
Author: Max Franz <maxk...@gmail.com>
Date: 2024-12-13 (Fri, 13 Dec 2024)

Changed paths:
M documentation/demos/fcose-gene/code.js
M documentation/demos/fcose-gene/index.html

Log Message:
-----------
Add button tooltips & compound link #3303


Commit: f8ea79038b20fa19c3ec7955bfeb00e9b50dac06
https://github.com/cytoscape/cytoscape.js/commit/f8ea79038b20fa19c3ec7955bfeb00e9b50dac06
Author: Max Franz <maxk...@gmail.com>
Date: 2024-12-17 (Tue, 17 Dec 2024)

Changed paths:
A documentation/demos/fcose-gene/code.js
A documentation/demos/fcose-gene/cy-style.json
A documentation/demos/fcose-gene/data.json
A documentation/demos/fcose-gene/index.html
A documentation/demos/fcose-gene/style.css
M documentation/docmaker.json
A documentation/img/demos/fcose-gene.png

M documentation/md/extensions.md
M documentation/md/intro.md

Log Message:
-----------

Merge pull request #3303 from cytoscape/docs/fcose-demo-and-misc

FCOSE demo & misc. docs fixes for 3.31.0


Compare: https://github.com/cytoscape/cytoscape.js/compare/0ec556815315...f8ea79038b20