Build failed in Jenkins: coreapp-cyndex-2 #191
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cytoscape.b...@gmail.com
May 3, 2019, 8:47:54 PM5/3/19
to cytosc...@googlegroups.com
See <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/191/changes>
Changes:
[brettjsettle] Massive cleanup, organized with new CX Support
[brettjsettle] Register networks on creation
[brettjsettle] Small updates for REST
[brettjsettle] Reorganized
------------------------------------------
Started by an SCM change
Building in workspace <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/>
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/cytoscape/cy-ndex-2.git # timeout=10
Fetching upstream changes from https://github.com/cytoscape/cy-ndex-2.git
> git --version # timeout=10
> git -c core.askpass=true fetch --tags --progress https://github.com/cytoscape/cy-ndex-2.git +refs/heads/*:refs/remotes/origin/*
> git rev-parse origin/master^{commit} # timeout=10
Checking out Revision c0c7dcf00f94ad128c5c9309534c5e156f7e1c56 (origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f c0c7dcf00f94ad128c5c9309534c5e156f7e1c56
> git rev-list 77642faab1606f7694be249ac20e7203e407a038 # timeout=10
> git tag -a -f -m Jenkins Build #191 jenkins-coreapp-cyndex-2-191 # timeout=10
Parsing POMs
Modules changed, recalculating dependency graph
[workspace] $ /opt/jdk1.8.0_45/bin/java -Djava.awt.headless=true -Xmx2048M -XX:MaxPermSize=512M -cp /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.6.jar:/opt/maven/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /opt/maven /var/lib/tomcat6/webapps/jenkins/WEB-INF/lib/remoting-2.33.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.6.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-commons-1.6.jar 38454
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0
<===[JENKINS REMOTING CAPACITY]===> channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven: -B -f <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/pom.xml> clean deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building CyNDEx-2 2.3.1
[INFO] ------------------------------------------------------------------------
Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
Downloading: http://maven.teamdev.com/repository/products/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
Downloading: http://repo.maven.apache.org/maven2/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
[WARNING] The POM for org.ndexbio.client:ndex-java-client:jar:2.4.1 is missing, no dependency information available
Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
Downloading: http://maven.teamdev.com/repository/products/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
Downloading: http://repo.maven.apache.org/maven2/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 4.369s
[INFO] Finished at: Sat May 04 00:45:07 UTC 2019
[INFO] Final Memory: 17M/487M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project cy-ndex-2: Could not resolve dependencies for project org.cytoscape:cy-ndex-2:bundle:2.3.1: Could not find artifact org.ndexbio.client:ndex-java-client:jar:2.4.1 in cytoscape_releases (http://code.cytoscape.org/nexus/content/repositories/releases/) -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/pom.xml> to org.cytoscape/cy-ndex-2/2.3.1/cy-ndex-2-2.3.1.pom
Sending e-mails to: cytosc...@googlegroups.com
channel stopped
Changes:
[brettjsettle] Massive cleanup, organized with new CX Support
[brettjsettle] Register networks on creation
[brettjsettle] Small updates for REST
[brettjsettle] Reorganized
------------------------------------------
Started by an SCM change
Building in workspace <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/>
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/cytoscape/cy-ndex-2.git # timeout=10
Fetching upstream changes from https://github.com/cytoscape/cy-ndex-2.git
> git --version # timeout=10
> git -c core.askpass=true fetch --tags --progress https://github.com/cytoscape/cy-ndex-2.git +refs/heads/*:refs/remotes/origin/*
> git rev-parse origin/master^{commit} # timeout=10
Checking out Revision c0c7dcf00f94ad128c5c9309534c5e156f7e1c56 (origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f c0c7dcf00f94ad128c5c9309534c5e156f7e1c56
> git rev-list 77642faab1606f7694be249ac20e7203e407a038 # timeout=10
> git tag -a -f -m Jenkins Build #191 jenkins-coreapp-cyndex-2-191 # timeout=10
Parsing POMs
Modules changed, recalculating dependency graph
[workspace] $ /opt/jdk1.8.0_45/bin/java -Djava.awt.headless=true -Xmx2048M -XX:MaxPermSize=512M -cp /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.6.jar:/opt/maven/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /opt/maven /var/lib/tomcat6/webapps/jenkins/WEB-INF/lib/remoting-2.33.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.6.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-commons-1.6.jar 38454
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0
<===[JENKINS REMOTING CAPACITY]===> channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven: -B -f <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/pom.xml> clean deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building CyNDEx-2 2.3.1
[INFO] ------------------------------------------------------------------------
Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
Downloading: http://maven.teamdev.com/repository/products/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
Downloading: http://repo.maven.apache.org/maven2/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
[WARNING] The POM for org.ndexbio.client:ndex-java-client:jar:2.4.1 is missing, no dependency information available
Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
Downloading: http://maven.teamdev.com/repository/products/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
Downloading: http://repo.maven.apache.org/maven2/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 4.369s
[INFO] Finished at: Sat May 04 00:45:07 UTC 2019
[INFO] Final Memory: 17M/487M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project cy-ndex-2: Could not resolve dependencies for project org.cytoscape:cy-ndex-2:bundle:2.3.1: Could not find artifact org.ndexbio.client:ndex-java-client:jar:2.4.1 in cytoscape_releases (http://code.cytoscape.org/nexus/content/repositories/releases/) -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/pom.xml> to org.cytoscape/cy-ndex-2/2.3.1/cy-ndex-2-2.3.1.pom
Sending e-mails to: cytosc...@googlegroups.com
channel stopped
cytoscape.b...@gmail.com
May 9, 2019, 1:52:10 PM5/9/19
to cytosc...@googlegroups.com
See <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/192/changes>
Changes:
[unknown] Update to staging homepage, add search functionality
[unknown] Alternative base URL via Cytoscape properties
[unknown] Split query building process, URLEncode query genes
[unknown] Reformat query to match search portal format
------------------------------------------
Started by an SCM change
Building in workspace <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/>
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/cytoscape/cy-ndex-2.git # timeout=10
Fetching upstream changes from https://github.com/cytoscape/cy-ndex-2.git
> git --version # timeout=10
> git -c core.askpass=true fetch --tags --progress https://github.com/cytoscape/cy-ndex-2.git +refs/heads/*:refs/remotes/origin/*
> git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 7d263c0467da8ad7ee1019eadc56986206c685c0 (origin/master)
> git rev-list c0c7dcf00f94ad128c5c9309534c5e156f7e1c56 # timeout=10
> git tag -a -f -m Jenkins Build #192 jenkins-coreapp-cyndex-2-192 # timeout=10
Parsing POMs
[workspace] $ /opt/jdk1.8.0_45/bin/java -Djava.awt.headless=true -Xmx2048M -XX:MaxPermSize=512M -cp /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.6.jar:/opt/maven/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /opt/maven /var/lib/tomcat6/webapps/jenkins/WEB-INF/lib/remoting-2.33.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.6.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-commons-1.6.jar 39155
[INFO] Finished at: Thu May 09 17:45:03 UTC 2019
Changes:
[unknown] Update to staging homepage, add search functionality
[unknown] Alternative base URL via Cytoscape properties
[unknown] Split query building process, URLEncode query genes
[unknown] Reformat query to match search portal format
------------------------------------------
Started by an SCM change
Building in workspace <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/>
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/cytoscape/cy-ndex-2.git # timeout=10
Fetching upstream changes from https://github.com/cytoscape/cy-ndex-2.git
> git --version # timeout=10
> git -c core.askpass=true fetch --tags --progress https://github.com/cytoscape/cy-ndex-2.git +refs/heads/*:refs/remotes/origin/*
> git rev-parse origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 7d263c0467da8ad7ee1019eadc56986206c685c0
> git rev-list c0c7dcf00f94ad128c5c9309534c5e156f7e1c56 # timeout=10
> git tag -a -f -m Jenkins Build #192 jenkins-coreapp-cyndex-2-192 # timeout=10
Parsing POMs
[workspace] $ /opt/jdk1.8.0_45/bin/java -Djava.awt.headless=true -Xmx2048M -XX:MaxPermSize=512M -cp /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.6.jar:/opt/maven/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /opt/maven /var/lib/tomcat6/webapps/jenkins/WEB-INF/lib/remoting-2.33.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.6.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-commons-1.6.jar 39155
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0
<===[JENKINS REMOTING CAPACITY]===> channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven: -B -f <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/pom.xml> clean deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building CyNDEx-2 2.4.0-SNAPSHOT
<===[JENKINS REMOTING CAPACITY]===> channel started
log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter).
log4j:WARN Please initialize the log4j system properly.
Executing Maven: -B -f <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/pom.xml> clean deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
Downloading: http://maven.teamdev.com/repository/products/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
Downloading: http://repo.maven.apache.org/maven2/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
[WARNING] The POM for org.ndexbio.client:ndex-java-client:jar:2.4.1 is missing, no dependency information available
Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
Downloading: http://maven.teamdev.com/repository/products/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
Downloading: http://repo.maven.apache.org/maven2/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3.772s
Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
Downloading: http://maven.teamdev.com/repository/products/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
Downloading: http://repo.maven.apache.org/maven2/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.pom
[WARNING] The POM for org.ndexbio.client:ndex-java-client:jar:2.4.1 is missing, no dependency information available
Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
Downloading: http://maven.teamdev.com/repository/products/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
Downloading: http://repo.maven.apache.org/maven2/org/ndexbio/client/ndex-java-client/2.4.1/ndex-java-client-2.4.1.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Finished at: Thu May 09 17:45:03 UTC 2019
[INFO] Final Memory: 17M/487M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project cy-ndex-2: Could not resolve dependencies for project org.cytoscape:cy-ndex-2:bundle:2.4.0-SNAPSHOT: Could not find artifact org.ndexbio.client:ndex-java-client:jar:2.4.1 in cytoscape_releases (http://code.cytoscape.org/nexus/content/repositories/releases/) -> [Help 1]
[INFO] ------------------------------------------------------------------------
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/coreapp-cyndex-2/ws/pom.xml> to org.cytoscape/cy-ndex-2/2.4.0-SNAPSHOT/cy-ndex-2-2.4.0-SNAPSHOT.pom
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
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