I'm new to cytoscape and I'm trying to build a ceRNA network app for cytoscape.
In my app, I read 7 files from user about mRNA, circRNA, lncRNA and miRNA's expression data and their interactions.
I did some work on files and now I hava all nodes and edges needed for my ceRNA network.
I need different shapes for each mRNA, circRNA, miRNA and lncRNA nodes.
now I have problem for creating nodes, edges and finally my network.
How can I create nodes and edges in cytoscape app (depend on user input file, I have many nodes and edges)?
Can you please help me or introduce some documentation or sample codes?