In Cytoscape\output.txt:
karaf.base: D:\Cytoscape_v3.8.2\framework
JAVA_HOME: C:\Program Files\AdoptOpenJDK\jdk-11.0.7.10-hotspot
org.cytoscape.app.internal.exception.AppStartupException: Bundle start error
at org.cytoscape.app.internal.manager.BundleApp.start(BundleApp.java:84) ~[?:?]
at org.cytoscape.app.internal.manager.AppManager.startApps(AppManager.java:404) ~[?:?]
at org.cytoscape.app.internal.manager.AppManager.initializeApps(AppManager.java:374) ~[?:?]
at org.cytoscape.app.internal.manager.AppManager.lambda$attemptInitialization$0(AppManager.java:235) ~[?:?]
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?]
at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?]
at java.lang.Thread.run(Thread.java:834) [?:?]
Caused by: org.osgi.framework.BundleException: Unable to resolve org.cytoscape.boolean_network [122](R 122.0): missing requirement [org.cytoscape.boolean_network [122](R 122.0)] osgi.wiring.package; (osgi.wiring.package=net.sf.tweety.logics.pl.syntax) Unresolved requirements: [[org.cytoscape.boolean_network [122](R 122.0)] osgi.wiring.package; (osgi.wiring.package=net.sf.tweety.logics.pl.syntax)]
at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:4149) ~[?:?]
at org.apache.felix.framework.Felix.startBundle(Felix.java:2119) ~[?:?]
at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:998) ~[?:?]
at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:984) ~[?:?]
at org.cytoscape.app.internal.manager.BundleApp.start(BundleApp.java:82) ~[?:?]
... 8 more
If I understand correctly, it says here that net.sf.tweety.logics.pl.syntax is missing, but this package is already inside net.sf.tweety.tweety-full.
in pom.xml :
<Embed-Dependency>tweety-full</Embed-Dependency>
<Embed-Transitive>true</Embed-Transitive>
<dependency>
<groupId>net.sf.tweety</groupId>
<artifactId>tweety-full</artifactId>
<version>1.17</version>
</dependency>