CySBML: a Cytoscape plugin for SBML

[Matthias König]

------------------------------------------------------------
CySBML v1.2 for Cytoscape-2.8.*
------------------------------------------------------------
We are pleased to announce the release of CySBML available for
download from http://sourceforge.net/projects/cysbml/.

CySBML is a Cytoscape plugin for the import and work with SBML files
in Cytoscape providing the visualisation of SBML annotations within
the network context. The main features are

- Java based SBML parser for Cytoscape based on the java SBML library
JSBML
- simple access to SBML models and SBML annotations via BioModel and
MIRIAM WebServices
- supports all versions of SBML
- support of SBML Layout Package
- support of SBML Qualitative Models Package
- provides SBML validation (SBML warnings and errors accessible)
- creates standard network layout based on the SBML species/reaction
model
- provides access to RDF based annotation information within the
network context
- Navigation menu based on the SBML structure linked to layout and
annotation information
- successfully tested with all SBML.org and Biomodels.org test cases
(sbml-test-cases-2.0.2, BioModels_Database-r21-sbml_files)

Please try and report any problems you encounter using CySBML to
matthia...@charite.de

Thanks and have fun
The CySBML team.