Trouble with cumulus cellranger count on terra

[Christopher Dall]

Hi all,

Very new to terra and cellranger, so I will try to provide as much information as possible. 

I am trying to run Cellranger count on some data that I have.  Using Cellranger Count V7. I have files as below

subfolder name: 23188FL-01-01-01

File names: 

     23188FL-01-01-01_S1_L007_R1_001.fastq.gz

     23188FL-01-01-01_S1_L007_R2_001.fastq.gz

My understanding, from reading cellranger count information, that the subfolder name should match the sample name, which I believe I've done as above?

I am trying to align the data to a human genome, and put the following inputs on the workflow:

When I run the workflow, however; I get the following error:

When I search the error, it seems to be a problem with the naming convention? However; I thought I named it correctly. Perhaps I misinterpreted the instructions, and need to put each fast q in a subfolder within that original folder?

Thanks so much in advance for any assistance!

Chris