Pegasus human_lung Marker set Issue Inquiry

[dina...@student.ubc.ca]

Dear Pegasus team,

I have a problem with pegasus.infer_cell_types human lung marker set. I have the issue ( attached) as I always get JSONDecodeError: Expecting ',' delimiter: line 200 column 3 (char 5924).

kindly reply to my email

Thank you

Dina Abbas, MSc
PhD Student, UBC
Experimental Medicine Program
Centre for Heart Lung Innovation (HLI)
1081 Burrard Street Vancouver, BC V6Z 1Y6

[Yiming Yang]

Hello Dina,

Thanks for reporting this bug. It's fixed in version 1.8.1, which was just released. Please try it out and let us know if the issue still persists.

Sincerely,

Yiming

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[dina...@student.ubc.ca]

Dear Yihming, 

Thank you very much for your kind reply, I have already updated the version to v 1.8.1 . However, I have experienced a different  problem with pg.louvain package that I never experienced in last version 

Attached here 

On Aug 24, 2023, at 10:37 PM, Yiming Yang <yang.y...@gmail.com> wrote:



[CAUTION: Non-UBC Email]

[Yiming Yang]

Does leiden function work? Or both failed?

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[dina...@student.ubc.ca]

Dear Yang,

Thank you very much, everything is working fine now.

Much appreciated for your quick response.

Dina Abbas, MSc
PhD Student, UBC
Experimental Medicine Program
Centre for Heart Lung Innovation (HLI)
1081 Burrard Street Vancouver, BC V6Z 1Y6

________________________________________
From: Yiming Yang [yang.y...@gmail.com]
Sent: Thursday, August 24, 2023 11:22 PM
To: dina...@student.ubc.ca
Cc: remove
Subject: Re: Pegasus human_lung Marker set Issue Inquiry

[CAUTION: Non-UBC Email]

Does leiden function work? Or both failed?

On Fri, Aug 25, 2023 at 2:17 PM dina...@student.ubc.ca<mailto:dina...@student.ubc.ca> <dina...@student.ubc.ca<mailto:dina...@student.ubc.ca>> wrote:
Dear Yihming,

Thank you very much for your kind reply, I have already updated the version to v 1.8.1 . However, I have experienced a different problem with pg.louvain package that I never experienced in last version

Attached here [image0.png]

On Aug 24, 2023, at 10:37 PM, Yiming Yang <yang.y...@gmail.com<mailto:yang.y...@gmail.com>> wrote:


[CAUTION: Non-UBC Email]
Hello Dina,

Thanks for reporting this bug. It's fixed in version 1.8.1, which was just released. Please try it out and let us know if the issue still persists.


Sincerely,
Yiming

On Wed, Aug 23, 2023 at 10:57 AM dina...@student.ubc.ca<mailto:dina...@student.ubc.ca> <dina...@student.ubc.ca<mailto:dina...@student.ubc.ca>> wrote:
Dear Pegasus team,

I have a problem with pegasus.infer_cell_types human lung marker set. I have the issue ( attached) as I always get JSONDecodeError: Expecting ',' delimiter: line 200 column 3 (char 5924).

kindly reply to my email

Thank you

Dina Abbas, MSc
PhD Student, UBC
Experimental Medicine Program
Centre for Heart Lung Innovation (HLI)
1081 Burrard Street Vancouver, BC V6Z 1Y6

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[Yiming Yang]

Dear Dina,

Glad it works finally. And thank you very much for reporting these issues to help us improve the software.

Sincerely,

Yiming

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